Browse Element(s) Details


Os.23612.1.S1_at

Description gb:AK121145.1
DB_XREF= gi:37990768
TID=Os.23612.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078A10, full insert sequence.
FL= gb:AK121145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g262906/11hypothetical protein
LOC_Os01g267842/11hypothetical protein
LOC_Os07g079502/11Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26240OsAffx.19542.3.S1_x_at6/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26240OsAffx.9949.1.S1_at1/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein
LOC_Os01g26259NANA1+14868841..14869235NA
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23612.1.S1_at--177--471Chr01:14883514..14883538 (25 bp)
ATCTCTGGCGCCCTCTCTGTTGTTT
NONE
Os.23612.1.S1_at--663--9512Chr01:15091434..15091458 (25 bp)
TCTCTGTTGTTTGCTCATCGATCAT
LOC_Os01g26784
Os.23612.1.S1_at--468--10271Chr01:14883536..14883560 (25 bp)
TTTGCTCATCGATCATTGAGGGCGA
NONE
Os.23612.1.S1_at--386--5832Chr01:15091484..15091508 (25 bp)
GACCGTGAAGCAGTGGAGTTCTCGA
LOC_Os01g26784
Os.23612.1.S1_at--638--6671Chr01:14883625..14883649 (25 bp)
GTTGCTCCCGTGTCTGTCCGCGAGG
NONE
Os.23612.1.S1_at--318--5513Chr01:15092926..15092950 (25 bp)
GAAAAGAAGCATTTGGACCACGCCT
NONE
Os.23612.1.S1_at--474--1453Chr01:15092930..15092954 (25 bp)
AGAAGCATTTGGACCACGCCTCCTG
NONE
Os.23612.1.S1_at--445--4352Chr01:15092943..15092967 (25 bp)
CCACGCCTCCTGATTTACAAGGTTA
NONE
Os.23612.1.S1_at--100--4472Chr01:15092947..15092971 (25 bp)
GCCTCCTGATTTACAAGGTTAACTA
NONE
Os.23612.1.S1_at--782--152Chr01:15092989..15093013 (25 bp)
ATTATGTGCACATTACAGTTTTGTT
NONE
Os.23612.1.S1_at--849--5112Chr01:15092996..15093020 (25 bp)
GCACATTACAGTTTTGTTTTACCTT
NONE
Target Sequence 
ATCTCTGGCGCCCTCTCTGTTGTTTGCTCATCGATCATTGAGGGCGAGGTGGTGGGGAAAGGGGACCGTGAAGCAGTGGA
GTTCTCGATGGGCGACGGCGATGGCAGGGCGGTTGCTCCCGTGTCTGTCCGCGAGGCAGCCATGGCTATTCCGGTGGCCG
TCAGCGAGGTCCCCACGGAGCACTTCGTGAGGGACATCGGCGCAGCCATGGGGGTTCGCTTCCTGGCGTGCGAGGCGACC
TACTACAATGGGGATCTCGTAGGTGGAGCTCTTATCCCCAAACCAGCAGCCAACCATGGGGCAAACTGGATCCCAAGGTA
GGGATGGTGGTGGTGGAGCAGGGGGGAGGGACAGTTTCTCAGCGAACTCTGCAAGCACAAGTTCAGCCAAGAAAAGCAGA
ATAGGTACAGTGAAAAGAAGCATTTGGACCACGCCTCCTGATTTACAAGGTTAACTATTTTGTAAAACCAAAATATTATG
TGCACATTACAGTTTTGTTTTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis