Browse Element(s) Details


Os.33851.3.A1_x_at

Description gb:NM_194021.1
DB_XREF= gi:34915125
GEN=P0503E05.12
TID=Os.33851.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33851 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative wall-associated kinase 2 (P0503E05.12), mRNA.
PROD=putative wall-associated kinase 2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g177101/11Leucine Rich Repeat family protein, expressed
LOC_Os01g262801/11wall-associated kinase 3, putative, expressed
LOC_Os01g267801/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17690OsAffx.2656.1.S1_at10/112+10197327..10199936hypothetical protein
LOC_Os02g17700Os.49441.1.S1_at11/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17700Os.24140.1.A1_at1/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17714NANA2+10226796..10228777hypothetical protein
LOC_Os02g17720Os.45957.4.S1_x_at1/112+10230581..10235374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g17730OsAffx.2657.1.S1_at11/112+10239686..10240108Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33851.3.A1_x_at--791--1251Chr01:14810193..14810217 (25 bp)
AGATTTTGGCGCCTCCATATTAGCA
NONE
Os.33851.3.A1_x_at--1001--1551Chr01:14810229..14810253 (25 bp)
AGCGCAGTTCGTGACAATGGTTCAA
NONE
Os.33851.3.A1_x_at--740--7432Chr01:14810317..14810341 (25 bp)
GTGTATAGCTTTGGTGTGGTCATCT
NONE
Os.33851.3.A1_x_at--975--7731Chr01:14810329..14810353 (25 bp)
GGTGTGGTCATCTTGGAGATCCTTA
NONE
Os.33851.3.A1_x_at--951--6031Chr01:14810344..14810368 (25 bp)
GAGATCCTTACTGGGCAGATGCCAT
NONE
Os.33851.3.A1_x_at--694--431Chr01:14810438..14810462 (25 bp)
ATCTTGAGGCCATGCTAGATAGCCA
NONE
Os.33851.3.A1_x_at--878--8511Chr01:14810483..14810507 (25 bp)
TGGAACTGCTCAGTGGACTTGCTGA
NONE
Os.33851.3.A1_x_at--849--5511Chr01:14810588..14810612 (25 bp)
GAAAACTTTCGAAACATCCTTGGAT
NONE
Os.33851.3.A1_x_at--308--2511Chr01:14810600..14810624 (25 bp)
AACATCCTTGGATACAGCGTGATAG
NONE
Os.33851.3.A1_x_at--591--5651Chr01:14810628..14810652 (25 bp)
GACAGAGGGCTATCTCAGTGGACCA
NONE
Os.33851.3.A1_x_at--52--7513Chr01:15090039..15090063 (25 bp)
GTGGACCATCAACCAGTAACTTTGA
LOC_Os01g26780
Target Sequence 
AGATTTTGGCGCCTCCATATTAGCACCAAATGATGAAGCGCAGTTCGTGACAATGGTTCAAGGAACATGTGGATATCTGG
ATCCTGAATATCTACAAACATGCCAGTTGACAGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTCATCTTGGAGATCCTT
ACTGGGCAGATGCCATTGAAACTTGAAGGTTCTGAGCTACAGAAAAGCTTGTCATCAAGCTTCCTATTGGCAATGAAGGA
GAATAATCTTGAGGCCATGCTAGATAGCCAAATTAAAGGTCATGAGAGCATGGAACTGCTCAGTGGACTTGCTGAGCTAG
CGAAGCAATGCTTGGACATGTGCAGTGAGAATAGGCCATCAATGAAAGACGTAGCTGAGGAGATTAGCAGACTAAGAAAA
CTTTCGAAACATCCTTGGATACAGCGTGATAGTGAGACAGAGGGCTATCTCAGTGGACCATCAACCAGTAACTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33851.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis