Browse Element(s) Details


Os.22508.2.S1_x_at

Description gb:AK105155.1
DB_XREF= gi:32990364
TID=Os.22508.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F09, full insert sequence.
FL= gb:AK105155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g176801/11ethylene-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein
LOC_Os02g17670OsAffx.17842.1.S1_at3/112+10173442..10174404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17690OsAffx.2656.1.S1_at10/112+10197327..10199936hypothetical protein
LOC_Os02g17700Os.49441.1.S1_at11/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17700Os.24140.1.A1_at1/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22508.2.S1_x_at--571--1011Chr01:9156943..9156967 (25 bp)
AGGTTGCCGGCCATCCATGCGCAGG
NONE
Os.22508.2.S1_x_at--969--4631Chr01:9156903..9156927 (25 bp)
GCGTCCTCTCGTGGGAAAGGAGCTC
NONE
Os.22508.2.S1_x_at--1116--3911Chr01:9156876..9156900 (25 bp)
CGGCCGTCCGCCTACTATGTGAGGA
NONE
Os.22508.2.S1_x_at--52--9311Chr01:9156870..9156894 (25 bp)
TCCGCCTACTATGTGAGGAGCTCAC
NONE
Os.22508.2.S1_x_at--847--7371Chr01:9156799..9156823 (25 bp)
GTGAGGAGCTCACCGGTCATCCACG
NONE
Os.22508.2.S1_x_at--596--7371Chr01:9156575..9156599 (25 bp)
GTGAGGGTGGAGCTCGCCGGTCGTC
NONE
Os.22508.2.S1_x_at--855--5875Chr01:4277534..4277558 (25 bp)
GAGCTAGCCGTGCTTTAATTTGGGC
NONE
Os.22508.2.S1_x_at--553--4491Chr01:9156529..9156553 (25 bp)
GCCGTGCTTTAATTTGGGCATATGT
NONE
Os.22508.2.S1_x_at--847--6378Chr05:10868846..10868870 (25 bp)
GATCGATGCATATGCATGCTTGCAT
NONE
Os.22508.2.S1_x_at--438--4997Chr05:10868859..10868883 (25 bp)
GCATGCTTGCATATGCTTTCACTGT
NONE
Os.22508.2.S1_x_at--711--252Chr01:10433998..10434022 (25 bp)
ATATGCTTTCACTGTTCCGGATATG
NONE
Target Sequence 
AGGTTGCCGGCCATCCATGCGCAGGGGGAGGAGCTCGCCGGCGTCCTCTCGTGGGAAAGGAGCTCGCCGGCCGTCCGCCT
ACTATGTGAGGAGCTCACCGGCGTCCGCGCGTGAGGGAAGACTCGCCGGCCGTCCGCCTGCCGGGTGAGGAGCTCACCGG
TCATCCACGCGCGGGGGAGGAGCCTGCTGGCCGTCCCGCGAGCTCGCCGGCGTCCGTGCGCGGTGGAGGAGCTCGCCTGC
CGTCCGCCTGCGGGGGACGAGCTCACCTGCCGTCCGCGCGCCGGGGAGGAGCTCTCCGGCGTTCGCGGATGGGGGAGGAG
CTCGCCTGCCGTCCGCGCGCCAGGGGAGGAGCTCGCCGGCGTCCGTGCGTGAGGGTGGAGCTCGCCGGTCGTCCACCTAC
CGGGGGAGGAGCTAGCCGTGCTTTAATTTGGGCATATGTATATATCGATCGATCGATGCATATGCATGCTTGCATATGCT
TTCACTGTTCCGGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22508.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis