Browse Element(s) Details


Os.49441.1.S1_at

Description gb:AK110791.1
DB_XREF= gi:32996000
TID=Os.49441.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-D01, full insert sequence.
FL= gb:AK110791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1770011/11NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17690OsAffx.2656.1.S1_at10/112+10197327..10199936hypothetical protein
LOC_Os02g17700Os.49441.1.S1_at11/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17700Os.24140.1.A1_at1/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17714NANA2+10226796..10228777hypothetical protein
LOC_Os02g17720Os.45957.4.S1_x_at1/112+10230581..10235374retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49441.1.S1_at--218--8291Chr02:10211978..10212002 (25 bp)
GGCATAGTTGCCACAAATCTCCATT
LOC_Os02g17700
Os.49441.1.S1_at--593--2491Chr02:10212421..10212441 (21 bp)
AACAGTGGCGAGCATCCTTGAAGAT
LOC_Os02g17700
Os.49441.1.S1_at--130--6651Chr02:10212453..10212477 (25 bp)
GTTGTTCATGGGACCTTCTGATTCA
LOC_Os02g17700
Os.49441.1.S1_at--659--7631Chr02:10212495..10212519 (25 bp)
GGGACTCCTTGAGATTCTAGAACAA
LOC_Os02g17700
Os.49441.1.S1_at--93--1431Chr02:10212521..10212545 (25 bp)
AGAACATCCGCTTTGTTCCTTTTGA
LOC_Os02g17700
Os.49441.1.S1_at--1022--9732Chr05:19044100..19044570 (25 bp)
TCAATTTTGTTCTCTAGCATGTCTT
NONE
Os.49441.1.S1_at--139--4391Chr02:10212711..10212737 (25 bp)
GCCAATTCTGCTCTTATAGATACCA
LOC_Os02g17700
Os.49441.1.S1_at--861--3851Chr02:10212753..10212777 (25 bp)
CTGACTTTGGCATAGTACACGGAAA
LOC_Os02g17700
Os.49441.1.S1_at--1018--2191Chr02:10212845..10212869 (25 bp)
ACAAATGGTTTCTCACTGTCCTGTG
LOC_Os02g17700
Os.49441.1.S1_at--116--1971Chr02:10212859..10212883 (25 bp)
ACTGTCCTGTGGTATCCATTTTTGA
LOC_Os02g17700
Os.49441.1.S1_at--948--8531Chr02:10212888..10212912 (25 bp)
TGGAGACAATTCGTTGCCAACTTTG
LOC_Os02g17700
Target Sequence 
GGCATAGTTGCCACAAATCTCCATTGTGCCGAAGAAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGTTCAT
GGGACCTTCTGATTCAAAAAAGCAAGGCAGGAGGGGACTCCTTGAGATTCTAGAACAAAAGAACATCCGCTTTGTTCCTT
TTGATGGCTGGGAAAAGATTGATTCTAAGGAAAAGATGGCAGGTGAGCTGAAGAACAAACCTAGAGAGAAGATAACAACC
TGGAATGAAATCCTGATGGCTTCAAACTAGGGATGAAAGTGAGGGCAGTCAATTTTGTTCTCTAGCATGTCTTGTAGAAT
TACATTAAAGCCAATTCTGCTCTTATAGATACCAGGAATAAAGTTTCAACTGACTTTGGCATAGTACACGGAAAAGCTAG
AATGGAAAGCTGTAACAAGTGAAGTATTGCAACAATGTGCAAAAGTGGTACTTCTTATCATACAAATGGTTTCTCACTGT
CCTGTGGTATCCATTTTTGAAACCTGGAGACAATTCGTTGCCAACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis