Browse Element(s) Details


Os.8589.1.S1_at

Description gb:AK072848.1
DB_XREF= gi:32982871
TID=Os.8589.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142E18, full insert sequence.
FL= gb:AK072848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1768011/11ethylene-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein
LOC_Os02g17670OsAffx.17842.1.S1_at3/112+10173442..10174404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17690OsAffx.2656.1.S1_at10/112+10197327..10199936hypothetical protein
LOC_Os02g17700Os.49441.1.S1_at11/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17700Os.24140.1.A1_at1/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8589.1.S1_at--211--3711Chr02:10181990..10182014 (25 bp)
CTAGATCGATGCATGGTCCGGTGAT
LOC_Os02g17680
Os.8589.1.S1_at--235--9291Chr02:10181974..10181998 (25 bp)
TCCGGTGATCTCTGTGGGCGCCATG
LOC_Os02g17680
Os.8589.1.S1_at--422--412Chr04:31226670..31226734 (24 bp)
ATCAGGAGCAGCCATCCTGCTGAAA
NONE
Os.8589.1.S1_at--549--4871Chr02:10181778..10181802 (25 bp)
GCTATGCACGTGTATGCTCATGGTT
LOC_Os02g17680
Os.8589.1.S1_at--514--4831Chr02:10181763..10181787 (25 bp)
GCTCATGGTTTGATGGGTGCAACAA
LOC_Os02g17680
Os.8589.1.S1_at--12--7491Chr02:10181704..10181728 (25 bp)
GTGTGGCTCTTGTCTAGCTAGAGAT
LOC_Os02g17680
Os.8589.1.S1_at--1139--6631Chr02:10181621..10181645 (25 bp)
GTTGTAGACAGCTGCCAGAGCGCAC
LOC_Os02g17680
Os.8589.1.S1_at--667--1371Chr02:10181605..10181629 (25 bp)
AGAGCGCACCTATGCTTGCTATAGC
LOC_Os02g17680
Os.8589.1.S1_at--275--4931Chr02:10181592..10181616 (25 bp)
GCTTGCTATAGCTTGGTGTTGATCA
LOC_Os02g17680
Os.8589.1.S1_at--605--5271Chr02:10181522..10181546 (25 bp)
GAATGCATGCATGTCACCTTGCTTG
LOC_Os02g17680
Os.8589.1.S1_at--580--4991Chr02:10181466..10181490 (25 bp)
GCATGCATGTGTATCTACGTTTTAA
LOC_Os02g17680
Target Sequence 
CTAGATCGATGCATGGTCCGGTGATCTCTGTGGGCGCCATGGCCAATGAAATGGCTGGCTCGGCTGGCTAATTAAGCTAG
CTGAAGAATCAATGGAAATATAGAGATCATATCTTACATATTACATCACATGCATGCATGCTTGCATTTGGGTTAATTAG
CTGCATAACATCAGGAGCAGCCATCCTGCTGAAAAGGCTGGTTCCTCTTGATGCTATGCACGTGTATGCTCATGGTTTGA
TGGGTGCAACAACAGAGTATATAACTGGTAGTGTGTGTGTGTGTGTGTGTGGCTCTTGTCTAGCTAGAGATTGATCTCTT
TGGGTGGATTAATGGATTATTATGCACTGGNAGAATGAAGAAGGGTTAAGTTGTAGACAGCTGCCAGAGCGCACCTATGC
TTGCTATAGCTTGGTGTTGATCATCAAACATCAGTAACACCCTTGTAATTTAAGTCTTTTATCTTGGTGAATGCATGCAT
GTCACCTTGCTTGTTCACGAAAATAATGGTCATGAATGTGTAATGCATGCATGTGTATCTACGTTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis