Browse Element(s) Details


Os.18701.1.S1_at

Description gb:AK072052.1
DB_XREF= gi:32982075
TID=Os.18701.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111I10, full insert sequence.
FL= gb:AK072052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1765011/11tocopherol cyclase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17610NANA2+10134295..10134525hypothetical protein
LOC_Os02g17620OsAffx.12089.1.S1_at11/112+10139209..10143835isochorismatase family protein, expressed
LOC_Os02g17630OsAffx.12090.1.S1_at11/112+10147149..10147622hypothetical protein
LOC_Os02g17640OsAffx.12091.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17640Os.11158.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein
LOC_Os02g17670OsAffx.17842.1.S1_at3/112+10173442..10174404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009644biological_processresponse to high light intensity
GO:0042360biological_processvitamin E metabolism
GO:0009507cellular_componentchloroplast
GO:0009706cellular_componentchloroplast inner membrane
GO:0009976molecular_functiontocopherol cyclase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18701.1.S1_at--179--371Chr02:10156337..10156361 (25 bp)
ATGAATAGGCCCTCCAATCTTGTCA
LOC_Os02g17650
Os.18701.1.S1_at--1113--3051Chr02:10156322..10156346 (25 bp)
AATCTTGTCACACCTTGAGTCTTGA
LOC_Os02g17650
Os.18701.1.S1_at--1089--6091Chr02:10156306..10156330 (25 bp)
GAGTCTTGATCTGTTCCTCACTTAG
LOC_Os02g17650
Os.18701.1.S1_at--890--10451Chr02:10156285..10156309 (25 bp)
TTAGCATCATGTTTTCAGCCAGAGA
LOC_Os02g17650
Os.18701.1.S1_at--1129--5571Chr02:10156208..10156232 (25 bp)
GAAAGGCGCCTTTCGGGTGAAATCA
LOC_Os02g17650
Os.18701.1.S1_at--1110--111Chr02:10156125..10156149 (25 bp)
ATTCATCTTAGGCAGTTCCATCCTT
LOC_Os02g17650
Os.18701.1.S1_at--1138--10671Chr02:10156110..10156134 (25 bp)
TTCCATCCTTTTGTGCTCATCTGAA
LOC_Os02g17650
Os.18701.1.S1_at--303--2871Chr02:10156066..10156090 (25 bp)
AAGTGATAGCTGGATGCCCGGGCCT
LOC_Os02g17650
Os.18701.1.S1_at--85--5211Chr02:10156035..10156059 (25 bp)
GCAATTGTGGAGGTCTTTCTGGTCA
LOC_Os02g17650
Os.18701.1.S1_at--758--7551Chr02:10155897..10155921 (25 bp)
GGGCCTAACAGCACATGACGGAAGT
LOC_Os02g17650
Os.18701.1.S1_at--177--5751Chr02:10155881..10155905 (25 bp)
GACGGAAGTTCTAGCCTGTTGGCAT
LOC_Os02g17650
Target Sequence 
ATGAATAGGCCCTCCAATCTTGTCACACCTTGAGTCTTGATCTGTTCCTCACTTAGCATCATGTTTTCAGCCAGAGAACT
ACAGAAACAGTAAACCAATCAGCATGGAGTTTATTCTCGTTGGGTTAGAGAAAGGCGCCTTTCGGGTGAAATCATGTTGC
ACAAATTTTTACNGATCAGGAATGGATGCTGTAATTCAAGAAAATAAGTATAATTCATCTTAGGCAGTTCCATCCTTTTG
TGCTCATCTGAACTTCTGAAGTATCATAAAGAAGTGATAGCTGGATGCCCGGGCCTGCATCTGCAATTGTGGAGGTCTTT
CTGGTCAGAATTGGCTGGAAACAATTGTTGTTAGCACACTTCATATGGTAAATCTTTCAGAGGTACTGACAGACAAAGAC
GTGTGTTTTCAATTATCATTGTACTAACAAGGATACCAGTGGGCCTAACAGCACATGACGGAAGTTCTAGCCTGTTGGCA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis