Browse Element(s) Details


OsAffx.12091.1.S1_at

Description tigr:9630.m01653
TID=OsAffx.12091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY143919 At3g16190MYA6_2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1764010/11isochorismatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17600Os.17619.1.S1_at2/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17600OsAffx.15364.2.S1_x_at1/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17610NANA2+10134295..10134525hypothetical protein
LOC_Os02g17620OsAffx.12089.1.S1_at11/112+10139209..10143835isochorismatase family protein, expressed
LOC_Os02g17630OsAffx.12090.1.S1_at11/112+10147149..10147622hypothetical protein
LOC_Os02g17640OsAffx.12091.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17640Os.11158.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein
LOC_Os02g17670OsAffx.17842.1.S1_at3/112+10173442..10174404retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12091.1.S1_at--595--451Chr02:10154699..10154829 (25 bp)
ATCTACGTCGTCTGGTCTCGGTTGC
LOC_Os02g17640
OsAffx.12091.1.S1_at--956--9451Chr02:10154689..10154709 (21 bp)
TCTGGTCTCGGTTGCTTGGTTTGGT
LOC_Os02g17640
OsAffx.12091.1.S1_at--129--5771Chr02:10154657..10154681 (25 bp)
GACGAGGACTGCGAATTTCGTGGTC
LOC_Os02g17640
OsAffx.12091.1.S1_at--409--5251Chr02:10154621..10154645 (25 bp)
GAATCTTGTGTAGCCTGTGGTGCTC
LOC_Os02g17640
OsAffx.12091.1.S1_at--941--7771Chr02:10154603..10154627 (25 bp)
GGTGCTCTAAGCAAGTGCCACAGAT
LOC_Os02g17640
OsAffx.12091.1.S1_at--1066--2851Chr02:10154591..10154615 (25 bp)
AAGTGCCACAGATTTCTTGGTTCAG
LOC_Os02g17640
OsAffx.12091.1.S1_at--209--7891Chr02:10154573..10154597 (25 bp)
GGTTCAGTGCAATGTATGTGCAGCA
LOC_Os02g17640
OsAffx.12091.1.S1_at--870--3451Chr02:10154550..10154574 (25 bp)
CAGTGTGGGATCAAAATTCGTGGGT
LOC_Os02g17640
OsAffx.12091.1.S1_at--178--10871Chr02:10154516..10154540 (25 bp)
TTGGTTTTTGACCATCCTGCTCGTC
LOC_Os02g17640
OsAffx.12091.1.S1_at--961--551Chr02:10154503..10154527 (25 bp)
ATCCTGCTCGTCGTTTCGGTTTGCA
LOC_Os02g17640
OsAffx.12091.1.S1_at--447--9391NONE
TCGTTTCGGTTTGCAGGTGGTCAGA
NONE
Target Sequence 
ATCTACGTCGTCTGGTCTCGGTTGCTTGGTTTGGTTGAATGCGACGAGGACTGCGAATTTCGTGGTCGGATTCAGGAGGA
ATCTTGTGTAGCCTGTGGTGCTCTAAGCAAGTGCCACAGATTTCTTGGTTCAGTGCAATGTATGTGCAGCAGTGTGGGAT
CAAAATTCGTGGGTGGATTTCCTTTGGTTTTTGACCATCCTGCTCGTCGTTTCGGTTTGCAGGTGGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis