Browse Element(s) Details


Os.11158.1.S1_at

Description gb:AK100588.1
DB_XREF= gi:32985797
TID=Os.11158.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106D13, full insert sequence.
FL= gb:AK100588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1764010/11isochorismatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17600Os.17619.1.S1_at2/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17600OsAffx.15364.2.S1_x_at1/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17610NANA2+10134295..10134525hypothetical protein
LOC_Os02g17620OsAffx.12089.1.S1_at11/112+10139209..10143835isochorismatase family protein, expressed
LOC_Os02g17630OsAffx.12090.1.S1_at11/112+10147149..10147622hypothetical protein
LOC_Os02g17640OsAffx.12091.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17640Os.11158.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein
LOC_Os02g17670OsAffx.17842.1.S1_at3/112+10173442..10174404retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11158.1.S1_at--812--6031NONE
GAGATCCATCTGTCAAATATAAGAG
NONE
Os.11158.1.S1_at--169--492Chr02:10152400..10152424 (25 bp)
ATCGGAGTGGAAACACCAACCTTGG
LOC_Os02g17640
Os.11158.1.S1_at--887--2631Chr02:10152383..10152407 (25 bp)
AACCTTGGAAGAATGGCGACGATAA
LOC_Os02g17640
Os.11158.1.S1_at--464--871Chr02:10152371..10152395 (25 bp)
ATGGCGACGATAAAATTGCTGTTTC
LOC_Os02g17640
Os.11158.1.S1_at--468--7411Chr02:10152344..10152368 (25 bp)
GTGATATACTACATGCTCAACTCCA
LOC_Os02g17640
Os.11158.1.S1_at--317--9871Chr02:10152335..10152359 (25 bp)
TACATGCTCAACTCCAAAGTATTGG
LOC_Os02g17640
Os.11158.1.S1_at--882--3671Chr02:10152296..10152320 (25 bp)
CTTTCCATCTCAGTGGGTGTAATTA
LOC_Os02g17640
Os.11158.1.S1_at--801--7071Chr02:10152278..10152302 (25 bp)
GTAATTATATTAACCTTATGTCAGG
LOC_Os02g17640
Os.11158.1.S1_at--319--7111Chr02:10152259..10152283 (25 bp)
GTCAGGTAGACCAACAGCAGATACT
LOC_Os02g17640
Os.11158.1.S1_at--261--131Chr02:10152216..10152240 (25 bp)
ATTCAACTGTACAACTCCTAACCAT
LOC_Os02g17640
Os.11158.1.S1_at--625--3251Chr02:10152205..10152229 (25 bp)
CAACTCCTAACCATTCCTATATAAA
LOC_Os02g17640
Target Sequence 
GAGATCCATCTGTCAAATATAAGAGATATGAAGAATATCGGAGTGGAAACACCAACCTTGGAAGAATGGCGACGATAAAA
TTGCTGTTTCTAGTGATATACTACATGCTCAACTCCAAAGTATTGGANGACATCCCTGTTNCTTTCCATCTCAGTGGGTG
TAATTATATTAACCTTATGTCAGGTAGACCAACAGCAGATACTGTTTATATATATATATATATTCAACTGTACAACTCCT
AACCATTCCTATATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis