Browse Element(s) Details


OsAffx.12089.1.S1_at

Description tigr:9630.m01651
TID=OsAffx.12089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1762011/11isochorismatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17590NANA2+10121710..10122009hypothetical protein
LOC_Os02g17600Os.17619.1.S1_at2/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17600OsAffx.15364.2.S1_x_at1/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17610NANA2+10134295..10134525hypothetical protein
LOC_Os02g17620OsAffx.12089.1.S1_at11/112+10139209..10143835isochorismatase family protein, expressed
LOC_Os02g17630OsAffx.12090.1.S1_at11/112+10147149..10147622hypothetical protein
LOC_Os02g17640OsAffx.12091.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17640Os.11158.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12089.1.S1_at--890--4051Chr02:10143747..10143771 (25 bp)
CGAGTAGATCGAGCTGTCCGGCCGT
LOC_Os02g17620
OsAffx.12089.1.S1_at--859--9271Chr02:10143731..10143755 (25 bp)
TCCGGCCGTGCGAATCTTGGTGATA
LOC_Os02g17620
OsAffx.12089.1.S1_at--275--1451Chr02:10143320..10143344 (25 bp)
AGAAGGATTTCGTGGATCCGGCGAC
LOC_Os02g17620
OsAffx.12089.1.S1_at--434--4151Chr02:10143232..10143256 (25 bp)
CGCGAGGCAGCGTGGTATCTTCATC
LOC_Os02g17620
OsAffx.12089.1.S1_at--947--7851Chr02:10143224..10143243 (20 bp)
GGTATCTTCATCGTCTGGGTGGTCA
LOC_Os02g17620
OsAffx.12089.1.S1_at--312--8931Chr02:10139903..10139927 (25 bp)
TGACCCTTCTGGGAGAGACGTTGAA
LOC_Os02g17620
OsAffx.12089.1.S1_at--174--5771Chr02:10139887..10139911 (25 bp)
GACGTTGAACTTTTTCGCAGGCACT
LOC_Os02g17620
OsAffx.12089.1.S1_at--628--5011Chr02:10139871..10139895 (25 bp)
GCAGGCACTTCTATTCTAGTGGCAA
LOC_Os02g17620
OsAffx.12089.1.S1_at--253--2911Chr02:10139832..10139856 (25 bp)
AAGGTTCCAAAGGTGCTGAGCTCGC
LOC_Os02g17620
OsAffx.12089.1.S1_at--6--5911Chr02:10139815..10139839 (25 bp)
GAGCTCGCTGATGGGCTTACTATCA
LOC_Os02g17620
OsAffx.12089.1.S1_at--82--9551Chr02:10139748..10139772 (25 bp)
TCTTTGCAACGCACCTTGATTCTGT
LOC_Os02g17620
Target Sequence 
CGAGTAGATCGAGCTGTCCGGCCGTGCGAATCTTGGTGATATCCATGGCGCCGGTGGCCGGCTCCGGCGACGAGTGGAGT
GAGACGGCCATGCTCGTCATCGATATGCAGAAGGATTTCGTGGATCCGGCGACAAGCAGCGCCGCGCTATTGGCCGGTGA
GGCCATTCTACCCACTGTCACCGCAGCAGTCGCCGTCGCGAGGCAGCGTGGTATCTTCATCGTCTGGGTGGTCAGAGAGC
ATGACCCTTCTGGGAGAGACGTTGAACTTTTTCGCAGGCACTTCTATTCTAGTGGCAAGGGCCTAGGGGTGGAAGGTTCC
AAAGGTGCTGAGCTCGCTGATGGGCTTACTATCAAAGATGGGGATTACAAGTTGGTGAAGACTAGGTTCAGTGCTTTCTT
TGCAACGCACCTTGATTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis