Browse Element(s) Details


OsAffx.12090.1.S1_at

Description tigr:9630.m01652
TID=OsAffx.12090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1763011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17600Os.17619.1.S1_at2/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17600OsAffx.15364.2.S1_x_at1/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17610NANA2+10134295..10134525hypothetical protein
LOC_Os02g17620OsAffx.12089.1.S1_at11/112+10139209..10143835isochorismatase family protein, expressed
LOC_Os02g17630OsAffx.12090.1.S1_at11/112+10147149..10147622hypothetical protein
LOC_Os02g17640OsAffx.12091.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17640Os.11158.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12090.1.S1_at--795--6571Chr02:10147194..10147218 (25 bp)
GATTCCATCCGTGATGAGGCGTGGC
LOC_Os02g17630
OsAffx.12090.1.S1_at--663--7331Chr02:10147236..10147260 (25 bp)
GTGCATTTCTCTTCTCACTTCAGTT
LOC_Os02g17630
OsAffx.12090.1.S1_at--1023--10531Chr02:10147262..10147286 (25 bp)
TTCTCCGTTTCGTTTGGTGGTGGAT
LOC_Os02g17630
OsAffx.12090.1.S1_at--474--7731Chr02:10147280..10147304 (25 bp)
GGTGGATGTTCCAAGATCTACTTTT
LOC_Os02g17630
OsAffx.12090.1.S1_at--539--2791Chr02:10147292..10147316 (25 bp)
AAGATCTACTTTTCGGTTGACACCG
LOC_Os02g17630
OsAffx.12090.1.S1_at--555--8951Chr02:10147309..10147333 (25 bp)
TGACACCGTCTTCGGTGGCGCTTTA
LOC_Os02g17630
OsAffx.12090.1.S1_at--57--8471Chr02:10147324..10147348 (25 bp)
TGGCGCTTTACCTGAGGGCCACTAT
LOC_Os02g17630
OsAffx.12090.1.S1_at--267--1091Chr02:10147338..10147362 (25 bp)
AGGGCCACTATTCATGGTTCTCCAT
LOC_Os02g17630
OsAffx.12090.1.S1_at--720--9471Chr02:10147356..10147380 (25 bp)
TCTCCATCGGGTTTTCAAGTTCAAT
LOC_Os02g17630
OsAffx.12090.1.S1_at--813--10851Chr02:10147391..10147415 (25 bp)
TTGGAGTTTCTCGTTTGTGGTGATG
LOC_Os02g17630
OsAffx.12090.1.S1_at--61--6191Chr02:10147560..10147584 (25 bp)
GAGGACATGCTCGAGCGCACCAAGC
LOC_Os02g17630
Target Sequence 
GATTCCATCCGTGATGAGGCGTGGCGGTGTTTTGGTTCTCCGGTGCATTTCTCTTCTCACTTCAGTTCTTCTCCGTTTCG
TTTGGTGGTGGATGTTCCAAGATCTACTTTTCGGTTGACACCGTCTTCGGTGGCGCTTTACCTGAGGGCCACTATTCATG
GTTCTCCATCGGGTTTTCAAGTTCAATCTCTAACTGATTGGAGTTTCTCGTTTGTGGTGATGGGATGGAGGAGAGTGGTA
GGAGCTCGGGGAGAAGGGAGTGGGAGGCGGGGCCCGCTCAGCCGCCGCACATTCCTCCCCACCTCATGTCAACTCCATCC
TCCCCGAGCAGACACCAGCGAGGACAACCCCACGCTTTCCCCCGCCGAGGACATGCTCGAGCGCACCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis