Browse Element(s) Details


Os.17619.1.S1_at

Description gb:AK060517.1
DB_XREF= gi:32970535
TID=Os.17619.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A08, full insert sequence.
FL= gb:AK071664.1 gb:AK060517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1753410/11Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g176002/11Galactoside 2-alpha-L-fucosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17480OsAffx.2654.1.S1_at11/112+10066676..10067446expressed protein
LOC_Os02g17490Os.54774.1.S1_x_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17490Os.54774.1.S1_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17500Os.11185.1.S1_a_at11/112+10074588..10081476Sugar transporter family protein, expressed
LOC_Os02g17520Os.48083.1.A1_at10/112+10084264..10087915Cytochrome C biogenesis protein, expressed
LOC_Os02g17534Os.17619.1.S1_at10/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17534OsAffx.15364.2.S1_x_at1/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17550NANA2+10100554..10104501transposon protein, putative, Mutator sub-class
LOC_Os02g17560OsAffx.24294.1.S1_at11/112+10105120..10105695hypothetical protein
LOC_Os02g17570OsAffx.10632.1.S1_at2/112+10108866..10109930retrotransposon protein, putative, unclassified
LOC_Os02g17580OsAffx.28496.1.S1_at11/112+10110994..10113779hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17619.1.S1_at--1155--2172Chr02:10130656..10130680 (25 bp)
ACACGGCGCACGACATGAGGGCGCT
LOC_Os02g17600
Os.17619.1.S1_at--810--1632Chr02:10130682..10130706 (25 bp)
AGCGAGATGTACCTGCTCAGCACCT
LOC_Os02g17600
Os.17619.1.S1_at--312--4251Chr02:10088554..10088578 (25 bp)
CCGTCGTACTACGAGTGCGCGGCGA
LOC_Os02g17534
Os.17619.1.S1_at--305--4631Chr02:10088533..10088557 (25 bp)
GCGAGGCGGAACTACGACGACATTG
LOC_Os02g17534
Os.17619.1.S1_at--1068--4091Chr02:10088516..10088540 (25 bp)
CGACATTGGCAAGGTGGTGCCGTAC
LOC_Os02g17534
Os.17619.1.S1_at--669--7571Chr02:10088465..10088489 (25 bp)
GGGCATCCAGCTCGTCAATGGAAGC
LOC_Os02g17534
Os.17619.1.S1_at--1083--7071Chr02:10088452..10088476 (25 bp)
GTCAATGGAAGCAGCCAGAGCCAGT
LOC_Os02g17534
Os.17619.1.S1_at--940--2491Chr02:10088387..10088411 (25 bp)
AACATGTGTTCAGATGTTCCACAAA
LOC_Os02g17534
Os.17619.1.S1_at--287--2311Chr02:10088355..10088379 (25 bp)
AAAGGCGCATGCATTGTACACCACA
LOC_Os02g17534
Os.17619.1.S1_at--1143--5491Chr02:10088269..10088293 (25 bp)
GAACACTGTGCCATTATACTTATAG
LOC_Os02g17534
Os.17619.1.S1_at--561--2991Chr02:10088211..10088235 (25 bp)
AATGTTTCATCTTAACCTGGTTGCT
NONE
Target Sequence 
ACACGGCGCACGACATGAGGGCGCTGAGCGAGATGTACCTGCTCAGCACCTGCGACGCGCTGCTCACCACCGGCTTCTCC
ACCTTCGGCTACGTCGCGCAGGGGCTCGCGGGGTTGCGGCCGTGGATCATGCCGCGGCGGCCGTGGTGGGAGAAGGAGGC
GGCCACGGCGGTGCCGGACCCGCCGTGCGCGCGGGTGGCGACGCCGGAGCCGTGCTTCCACTCGCCGTCGTACTACGAGT
GCGCGGCGAGGCGGAACTACGACGACATTGGCAAGGTGGTGCCGTACGTGCGGCGCTGCGAGGACGTCAGCTGGGGCATC
CAGCTCGTCAATGGAAGCAGCCAGAGCCAGTGGTAGTGTAAAACTGTAGATCACTGAATTGTATAGAGTAGAACATGTGT
TCAGATGTTCCACAAAAATACAAAAAGGCGCATGCATTGTACACCACAAATAATCAAATAATCTAGGCAGATGTAATGAT
ATAATGGCAAGAAATAATCTTAGAAGTTAGAACACTGTGCCATTATACTTATAGCAATCTATGACAGGATGTGACATTAC
GATATTAAATGTTTCATCTTAACCTGGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis