Browse Element(s) Details


Os.11185.1.S1_a_at

Description gb:AK073967.1
DB_XREF= gi:32983990
TID=Os.11185.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073C19, full insert sequence.
FL= gb:AK073967.1 gb:AK073268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1750011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17460OsAffx.24292.1.S1_at11/112+10043084..10050349Tesmin/TSO1-like CXC domain containing protein
LOC_Os02g17470Os.47909.1.A1_at11/112+10051269..10056495Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os02g17480OsAffx.2654.1.S1_at11/112+10066676..10067446expressed protein
LOC_Os02g17490Os.54774.1.S1_x_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17490Os.54774.1.S1_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17500Os.11185.1.S1_a_at11/112+10074588..10081476Sugar transporter family protein, expressed
LOC_Os02g17520Os.48083.1.A1_at10/112+10084264..10087915Cytochrome C biogenesis protein, expressed
LOC_Os02g17534Os.17619.1.S1_at10/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17534OsAffx.15364.2.S1_x_at1/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17550NANA2+10100554..10104501transposon protein, putative, Mutator sub-class
LOC_Os02g17560OsAffx.24294.1.S1_at11/112+10105120..10105695hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11185.1.S1_a_at--1039--7771Chr02:10080632..10080656 (25 bp)
GGTCCACAAGTTCTGTACACAATGT
LOC_Os02g17500
Os.11185.1.S1_a_at--652--2991Chr02:10080652..10080676 (25 bp)
AATGTTTTCCTCAGCTTGTGTGGTA
LOC_Os02g17500
Os.11185.1.S1_a_at--591--331Chr02:10081078..10081102 (25 bp)
ATACTTGTTGCTGAATACCTGCTGG
LOC_Os02g17500
Os.11185.1.S1_a_at--575--9971Chr02:10081093..10081117 (25 bp)
TACCTGCTGGGAAAGTCTACCGTGA
LOC_Os02g17500
Os.11185.1.S1_a_at--634--5331Chr02:10081179..10081203 (25 bp)
GAAGTACCCAGACATGCACCTGTGA
LOC_Os02g17500
Os.11185.1.S1_a_at--301--1171Chr02:10081206..10081230 (25 bp)
AGTAAGGGCGACCTAGCTCGTGCAT
LOC_Os02g17500
Os.11185.1.S1_a_at--393--4811Chr02:10081221..10081245 (25 bp)
GCTCGTGCATAAACCATCCATGTAG
LOC_Os02g17500
Os.11185.1.S1_a_at--496--6671Chr02:10081250..10081274 (25 bp)
GTTGCATCTGTATAGTTGGTCTTCT
LOC_Os02g17500
Os.11185.1.S1_a_at--181--6911Chr02:10081282..10081306 (25 bp)
GTATCTGGTAATCTGTGTTGTCTTC
LOC_Os02g17500
Os.11185.1.S1_a_at--972--9911Chr02:10081362..10081386 (25 bp)
TACTGATGGCCATAGTTTGAACCGT
LOC_Os02g17500
Os.11185.1.S1_a_at--852--6191Chr02:10081412..10081436 (25 bp)
GAGGAATAACAGCACTGGCTCTGCC
LOC_Os02g17500
Target Sequence 
GGTCCACAAGTTCTGTACACAATGTTTTCCTCAGCTTGTGTGGTAGCAGCAATATTTGTGCGGCGCCATGTGGTTGAAAC
AAAGGGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGATTTCATCAGCGAGTTTGAGGCAACA
ACAACCTACATGATTAGCATCTGACACTATACTTGTTGCTGAATACCTGCTGGGAAAGTCTACCGTGAAAGTTGATCACT
GAACCAAGCCAACATACCACGGACAGGCAGCGCCCTACACTGGACCAGGGAAGTACCCAGACATGCACCTGTGACCAGTA
AGGGCGACCTAGCTCGTGCATAAACCATCCATGTAGTGAGGTTGCATCTGTATAGTTGGTCTTCTGCTAGATGTATCTGG
TAATCTGTGTTGTCTTCATCANTTGTCATTTGTACACTGTCAGTATGGAGAAAAAAAGACGGGAAGTGTGGTTACTGATG
GCCATAGTTTGAACCGTGGATACGTTTTTTTTACTGTTTAAAGAGGAATAACAGCACTGGCTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11185.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis