Browse Element(s) Details


OsAffx.2654.1.S1_at

Description tigr:9630.m01637
TID=OsAffx.2654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1748011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17450OsAffx.12942.1.S1_at11/112+10040212..10042759hypothetical protein
LOC_Os02g17460OsAffx.24292.1.S1_at11/112+10043084..10050349Tesmin/TSO1-like CXC domain containing protein
LOC_Os02g17470Os.47909.1.A1_at11/112+10051269..10056495Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os02g17480OsAffx.2654.1.S1_at11/112+10066676..10067446expressed protein
LOC_Os02g17490Os.54774.1.S1_x_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17490Os.54774.1.S1_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17500Os.11185.1.S1_a_at11/112+10074588..10081476Sugar transporter family protein, expressed
LOC_Os02g17520Os.48083.1.A1_at10/112+10084264..10087915Cytochrome C biogenesis protein, expressed
LOC_Os02g17534Os.17619.1.S1_at10/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17534OsAffx.15364.2.S1_x_at1/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2654.1.S1_at--189--4251Chr02:10067187..10067211 (25 bp)
CCGGGAAGATCTACTGGTGGGCACC
LOC_Os02g17480
OsAffx.2654.1.S1_at--852--7711Chr02:10067162..10067186 (25 bp)
GGGTGGGCTAGTGCAGGTGTTCGAC
LOC_Os02g17480
OsAffx.2654.1.S1_at--885--9251Chr02:10067118..10067142 (25 bp)
TCCTCATGGAGTTCCCGAAGCACAT
LOC_Os02g17480
OsAffx.2654.1.S1_at--922--5371Chr02:10067102..10067126 (25 bp)
GAAGCACATGCGGTGGGAGTACCAC
LOC_Os02g17480
OsAffx.2654.1.S1_at--560--7471Chr02:10067090..10067114 (25 bp)
GTGGGAGTACCACAAGTCCAACCTC
LOC_Os02g17480
OsAffx.2654.1.S1_at--545--2191Chr02:10067079..10067103 (25 bp)
ACAAGTCCAACCTCCGGGTGATCGG
LOC_Os02g17480
OsAffx.2654.1.S1_at--115--7951Chr02:10067037..10067061 (25 bp)
GGATACGCGTCGTCCGCATGACCGG
LOC_Os02g17480
OsAffx.2654.1.S1_at--169--5831Chr02:10067018..10067042 (25 bp)
GACCGGCGAGGACCTGGAGATCTAC
LOC_Os02g17480
OsAffx.2654.1.S1_at--1045--7111Chr02:10066917..10066941 (25 bp)
GTCAGGAGGTGTTCTTCACCGCGGA
LOC_Os02g17480
OsAffx.2654.1.S1_at--765--1871Chr02:10066773..10066797 (25 bp)
ACGAGAGGAACAAGCACGTCGGCGA
LOC_Os02g17480
OsAffx.2654.1.S1_at--63--4511Chr02:10066717..10066741 (25 bp)
GCCGTCTTCCGTGCTTGCGGCGTAG
LOC_Os02g17480
Target Sequence 
CCGGGAAGATCTACTGGTGGGCACCGGGTGGGCTAGTGCAGGTGTTCGACGAGGCCACGGACACCTTCTTCCTCATGGAG
TTCCCGAAGCACATGCGGTGGGAGTACCACAAGTCCAACCTCCGGGTGATCGGCGGCGTGGACGGCGGCGGGATACGCGT
CGTCCGCATGACCGGCGAGGACCTGGAGATCTACGGCGAGAGCGGCGGCGGGGAGTGGGCGGTGGAGAGGAGCGTCCGGC
TGGCCGAAGCCACCCGCGGGCTGCCGGGGCGTCAGGAGGTGTTCTTCACCGCGGAGGCGCCGGCTGCGAGGATCGTGACC
GCCGGCGGCGACGGGTTCGTGACGCTGGCGCCGGCGGAAGATGAGACGTGGCTCTTCTCCGTCGACCTGGAGACCATGGA
GGCGGAGCGCGACCACGAGAGGAACAAGCACGTCGGCGAGGCGCACCCGTGCTCGGCGCCGCCGCTCGCCGCCGTCTTCC
GTGCTTGCGGCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis