Browse Element(s) Details


Os.47909.1.A1_at

Description gb:AK105691.1
DB_XREF= gi:32990900
TID=Os.47909.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C05, full insert sequence.
FL= gb:AK105691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1747011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17430NANA2+10026050..10031775retrotransposon protein, putative, unclassified
LOC_Os02g17440OsAffx.20736.1.S1_at2/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.27520.8.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.52323.1.S1_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440OsAffx.7527.1.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17450OsAffx.12942.1.S1_at11/112+10040212..10042759hypothetical protein
LOC_Os02g17460OsAffx.24292.1.S1_at11/112+10043084..10050349Tesmin/TSO1-like CXC domain containing protein
LOC_Os02g17470Os.47909.1.A1_at11/112+10051269..10056495Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os02g17480OsAffx.2654.1.S1_at11/112+10066676..10067446expressed protein
LOC_Os02g17490Os.54774.1.S1_x_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17490Os.54774.1.S1_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17500Os.11185.1.S1_a_at11/112+10074588..10081476Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47909.1.A1_at--199--2851Chr02:10055914..10055938 (25 bp)
AAGTCATTCACCCATGCGTAACAAG
LOC_Os02g17470
Os.47909.1.A1_at--512--8411Chr02:10055994..10056018 (25 bp)
GGCCCTTGAACAAAGCCTCCATTGG
LOC_Os02g17470
Os.47909.1.A1_at--1115--5691Chr02:10056038..10056062 (25 bp)
GACTATGTTCATCCATTTGACACCC
LOC_Os02g17470
Os.47909.1.A1_at--438--1811Chr02:10056059..10056083 (25 bp)
ACCCATGGGCGACCTCATAATTTGG
LOC_Os02g17470
Os.47909.1.A1_at--202--311Chr02:10056087..10056111 (25 bp)
ATAGCCGTGGCCATGGTTACAGGCA
LOC_Os02g17470
Os.47909.1.A1_at--858--6291Chr02:10056116..10056140 (25 bp)
GATGATCTGTTTCCTATTCGCAATC
LOC_Os02g17470
Os.47909.1.A1_at--207--3091Chr02:10056137..10056161 (25 bp)
AATCAAGGTGACCAGCGTGTCCTTT
LOC_Os02g17470
Os.47909.1.A1_at--313--4731Chr02:10056204..10056228 (25 bp)
GCTGGGTACAGATTCTTCGTGTTGA
LOC_Os02g17470
Os.47909.1.A1_at--454--10151Chr02:10056262..10056286 (25 bp)
TATCTCGATGCTTGAGGACTCCTGA
LOC_Os02g17470
Os.47909.1.A1_at--291--6191Chr02:10056275..10056299 (25 bp)
GAGGACTCCTGAAGCTTTGTAATAA
LOC_Os02g17470
Os.47909.1.A1_at--548--9891Chr02:10056325..10056349 (25 bp)
TACTTCCTTGGTTGGGTTGTTTCAG
LOC_Os02g17470
Target Sequence 
AAGTCATTCACCCATGCGTAACAAGCCCATGAACAGGGGACTAGACTTACGGGAGAGAAGCCGTTCACCCTTTCGGGACA
GGCCCTTGAACAAAGCCTCCATTGGAAGAGGTGGACCTGACCGAGACTATGTTCATCCATTTGACACCCATGGGCGACCT
CATAATTTGGGCAATAGCCGTGGCCATGGTTACAGGCAGGAGGATGATCTGTTTCCTATTCGCAATCAAGGTGACCAGCG
TGTCCTTTCCCGTCATCGGAATGGAATCCACTGAAATGTAATATCTTTCAGCTGGGTACAGATTCTTCGTGTTGATAGGC
TATCTGGAAAAGCGAATCTAATAAAAATTATCTCGATGCTTGAGGACTCCTGAAGCTTTGTAATAATGTTTAATGTTTTG
TACTGTGTAGTTACTTCCTTGGTTGGGTTGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47909.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis