Browse Element(s) Details


OsAffx.12942.1.S1_at

Description tigr:9630.m01634
TID=OsAffx.12942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1745011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17410OsAffx.2653.1.S1_at11/112+10016324..10016955hypothetical protein
LOC_Os02g17420Os.28943.1.S1_x_at4/112+10021994..10025227retrotransposon protein, putative, unclassified
LOC_Os02g17430NANA2+10026050..10031775retrotransposon protein, putative, unclassified
LOC_Os02g17440OsAffx.20736.1.S1_at2/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.27520.8.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.52323.1.S1_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440OsAffx.7527.1.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17450OsAffx.12942.1.S1_at11/112+10040212..10042759hypothetical protein
LOC_Os02g17460OsAffx.24292.1.S1_at11/112+10043084..10050349Tesmin/TSO1-like CXC domain containing protein
LOC_Os02g17470Os.47909.1.A1_at11/112+10051269..10056495Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os02g17480OsAffx.2654.1.S1_at11/112+10066676..10067446expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12942.1.S1_at--372--814Chr10:1337982..1338006 (25 bp)
ATGGGTTCAGGTTCTATACCTCCTG
NONE
OsAffx.12942.1.S1_at--645--1811Chr02:10041421..10041445 (25 bp)
ACGCGATGGTGGAGGTAGACTTTTC
LOC_Os02g17450
OsAffx.12942.1.S1_at--440--1391Chr02:10041437..10041461 (25 bp)
AGACTTTTCAAGATCCATTGCCGCC
LOC_Os02g17450
OsAffx.12942.1.S1_at--598--9172Chr07:412023..412195 (25 bp)
TGCCGCCGGAGGATCACCGAAGAAC
NONE
OsAffx.12942.1.S1_at--1143--3091Chr02:10041596..10041620 (25 bp)
AATAGGTACACTTCCGACAGTGCGT
LOC_Os02g17450
OsAffx.12942.1.S1_at--656--4211Chr02:10041609..10041633 (25 bp)
CCGACAGTGCGTATCCCAAGGAAAG
LOC_Os02g17450
OsAffx.12942.1.S1_at--252--4431Chr02:10041644..10041668 (25 bp)
GCCATTGGAAAATCCTGGGTCCATT
LOC_Os02g17450
OsAffx.12942.1.S1_at--780--9151Chr02:10041668..10041692 (25 bp)
TGCGCGCGGCAGTTTTTAGACTTCA
LOC_Os02g17450
OsAffx.12942.1.S1_at--282--6656Chr10:3207293..3207317 (25 bp)
GTTGAACTTCATGCGGTGTTGTCGA
NONE
OsAffx.12942.1.S1_at--793--8811Chr02:10041729..10041753 (25 bp)
TGTTGTCGATGGCTCTTCGTCTCTA
LOC_Os02g17450
OsAffx.12942.1.S1_at--529--9393Chr02:10041745..10041769 (25 bp)
TCGTCTCTACGGTTTTCACACCGAG
LOC_Os02g17450
Target Sequence 
ATGGGTTCAGGTTCTATACCTCCTGCCTCCCTCTGCATGGTCCCCCGACCAGGGAGGGCACCGTCGTCTTGCAGCTTCTT
CATGGACGCGATGGTGGAGGTAGACTTTTCAAGATCCATTGCCGCCGGAGGATCACCGAAGAACAAGACGGAGGAAATGA
GCTAGGGTTTTCTTTGCGGGAAGCGGAGAAGACGAAGAGCGCTAGGAAGCAGGAGAGTTTTTGGCAAACAGACTTCAAAT
GGATTCCCAAAATCCCTTTAAATAGGTACACTTCCGACAGTGCGTATCCCAAGGAAAGGAGAGAGATTGCCATTGGAAAA
TCCTGGGTCCATTGCGCGCGGCAGTTTTTAGACTTCAATTTAAATTCACTCATGACCGTTGAACTTCATGCGGTGTTGTC
GATGGCTCTTCGTCTCTACGGTTTTCACACCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis