Browse Element(s) Details


OsAffx.2653.1.S1_at

Description tigr:9630.m01630
TID=OsAffx.2653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1741011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17380Os.16591.1.S1_at11/112+9994013..9998242expressed protein
LOC_Os02g17390Os.9729.1.S1_a_at10/112+10001474..10010226Peroxisomal fatty acid beta-oxidation multifunctional protein, putative, expressed
LOC_Os02g17400OsAffx.2652.1.S1_at11/112+10010586..10013468Leucine Rich Repeat family protein
LOC_Os02g17410OsAffx.2653.1.S1_at11/112+10016324..10016955hypothetical protein
LOC_Os02g17420Os.28943.1.S1_x_at4/112+10021994..10025227retrotransposon protein, putative, unclassified
LOC_Os02g17430NANA2+10026050..10031775retrotransposon protein, putative, unclassified
LOC_Os02g17440OsAffx.20736.1.S1_at2/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.27520.8.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.52323.1.S1_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440OsAffx.7527.1.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17450OsAffx.12942.1.S1_at11/112+10040212..10042759hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2653.1.S1_at--528--3711Chr02:10016354..10016378 (25 bp)
CTAGTCCTGGTGTGTCTGCATGTGT
LOC_Os02g17410
OsAffx.2653.1.S1_at--1053--9271Chr02:10016358..10016382 (25 bp)
TCCTGGTGTGTCTGCATGTGTTGGC
LOC_Os02g17410
OsAffx.2653.1.S1_at--578--7432Chr02:10016365..10016389 (25 bp)
GTGTCTGCATGTGTTGGCGGAGATT
LOC_Os02g17410
OsAffx.2653.1.S1_at--854--10751Chr02:10016388..10016412 (25 bp)
TTGAGATGGGCGTCCGATTTTTAGC
LOC_Os02g17410
OsAffx.2653.1.S1_at--483--6132Chr02:10016392..10016416 (25 bp)
GATGGGCGTCCGATTTTTAGCTAAA
LOC_Os02g17410
OsAffx.2653.1.S1_at--906--8652Chr02:10016394..10016418 (25 bp)
TGGGCGTCCGATTTTTAGCTAAAAG
LOC_Os02g17410
OsAffx.2653.1.S1_at--120--8351Chr02:10016396..10016420 (25 bp)
GGCGTCCGATTTTTAGCTAAAAGAT
LOC_Os02g17410
OsAffx.2653.1.S1_at--876--10451Chr02:10016408..10016432 (25 bp)
TTAGCTAAAAGATCAGACATCCGAT
LOC_Os02g17410
OsAffx.2653.1.S1_at--173--1411Chr02:10016422..10016446 (25 bp)
AGACATCCGATCTGTAGTCACCTTT
LOC_Os02g17410
OsAffx.2653.1.S1_at--391--551Chr02:10016426..10016450 (25 bp)
ATCCGATCTGTAGTCACCTTTGCAT
LOC_Os02g17410
OsAffx.2653.1.S1_at--895--4231Chr02:10016428..10016452 (25 bp)
CCGATCTGTAGTCACCTTTGCATGT
LOC_Os02g17410
Target Sequence 
CTAGTCCTGGTGTGTCTGCATGTGTTGGCGGAGATTGAGATGGGCGTCCGATTTTTAGCTAAAAGATCAGACATCCGATC
TGTAGTCACCTTTGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis