Browse Element(s) Details


Os.16591.1.S1_at

Description gb:AK099750.1
DB_XREF= gi:32984959
TID=Os.16591.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092A18, full insert sequence.
FL= gb:AK099750.1 gb:AK061802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1738011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17350Os.27334.1.S1_at11/112+9972702..9978097VHS domain containing protein, expressed
LOC_Os02g17360Os.27024.1.S1_at11/112+9981496..9985904pentatricopeptide, putative, expressed
LOC_Os02g17370Os.9047.1.S1_at11/112+9988862..9990641expressed protein
LOC_Os02g17380Os.16591.1.S1_at11/112+9994013..9998242expressed protein
LOC_Os02g17390Os.9729.1.S1_a_at10/112+10001474..10010226Peroxisomal fatty acid beta-oxidation multifunctional protein, putative, expressed
LOC_Os02g17400OsAffx.2652.1.S1_at11/112+10010586..10013468Leucine Rich Repeat family protein
LOC_Os02g17410OsAffx.2653.1.S1_at11/112+10016324..10016955hypothetical protein
LOC_Os02g17420Os.28943.1.S1_x_at4/112+10021994..10025227retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16591.1.S1_at--1066--2791Chr02:9997568..9997592 (25 bp)
AAGATGCAATGCCACTCAGACCCAA
LOC_Os02g17380
Os.16591.1.S1_at--194--9611Chr02:9997583..9997607 (25 bp)
TCAGACCCAAAGTGCTCAGCGGAAA
LOC_Os02g17380
Os.16591.1.S1_at--303--8151Chr02:9997603..9997627 (25 bp)
GGAAATCTTCAACTGCAACCGTCAA
LOC_Os02g17380
Os.16591.1.S1_at--1158--8831Chr02:9997754..9997778 (25 bp)
TGATGGGAGCGGTGGTTTTCCTCCA
LOC_Os02g17380
Os.16591.1.S1_at--72--3411Chr02:9997826..9997850 (25 bp)
CAGCAACTACTTCGGTGGATTCCTT
LOC_Os02g17380
Os.16591.1.S1_at--312--9091Chr02:9997907..9997931 (25 bp)
TGCTCGAAGGCAACGCGCTGGATAT
LOC_Os02g17380
Os.16591.1.S1_at--534--5111Chr02:9997977..9998001 (25 bp)
GCACTACCCTATCTGTTGATCTGTA
LOC_Os02g17380
Os.16591.1.S1_at--908--9511Chr02:9998006..9998030 (25 bp)
TCTACAAGAATTCCTGCCGTGCATG
LOC_Os02g17380
Os.16591.1.S1_at--180--10191Chr02:9998033..9998057 (25 bp)
TATTTCGTTCACATTACCCGTAGTA
LOC_Os02g17380
Os.16591.1.S1_at--440--1171Chr02:9998054..9998078 (25 bp)
AGTAAATCATGGCTTGACCTCACCG
LOC_Os02g17380
Os.16591.1.S1_at--514--6071Chr02:9998120..9998144 (25 bp)
GAGTTCAGTGCTGTGGTACATCCAA
LOC_Os02g17380
Target Sequence 
AAGATGCAATGCCACTCAGACCCAAAGTGCTCAGCGGAAATCTTCAACTGCAACCGTCAAACGATCTGACCCCAAAGGAA
AAACTCAGGGGCCAAAATTGGATGATGGGAGCGGTGGTTTTCCTCCATTCCGTTTCGGCAAAGGTGGTGGTGGCGGCGGA
GGTGGTGGAGGTGGCAGCAACTACTTCGGTGGATTCCTTCTCTTCACTTGTGTGTTGCTCCTAGATTACCTGAAGGAGTT
TGAGAAAAACCTGATTGCTCGAAGGCAACGCGCTGGATATGATGCAAACAATGATATGTTCCAACAATAATTGTTTAACT
TGTTAGCACTACCCTATCTGTTGATCTGTAAAACTCTACAAGAATTCCTGCCGTGCATGTTTATTTCGTTCACATTACCC
GTAGTAAATCATGGCTTGACCTCACCGAGAGGAAGCTCAGATGCACTGGACACAGCTACTGGAAATGTGAGTTCAGTGCT
GTGGTACATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis