Browse Element(s) Details


OsAffx.2652.1.S1_at

Description tigr:9630.m01629
TID=OsAffx.2652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1740011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17360Os.27024.1.S1_at11/112+9981496..9985904pentatricopeptide, putative, expressed
LOC_Os02g17370Os.9047.1.S1_at11/112+9988862..9990641expressed protein
LOC_Os02g17380Os.16591.1.S1_at11/112+9994013..9998242expressed protein
LOC_Os02g17390Os.9729.1.S1_a_at10/112+10001474..10010226Peroxisomal fatty acid beta-oxidation multifunctional protein, putative, expressed
LOC_Os02g17400OsAffx.2652.1.S1_at11/112+10010586..10013468Leucine Rich Repeat family protein
LOC_Os02g17410OsAffx.2653.1.S1_at11/112+10016324..10016955hypothetical protein
LOC_Os02g17420Os.28943.1.S1_x_at4/112+10021994..10025227retrotransposon protein, putative, unclassified
LOC_Os02g17430NANA2+10026050..10031775retrotransposon protein, putative, unclassified
LOC_Os02g17440OsAffx.20736.1.S1_at2/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.27520.8.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.52323.1.S1_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440OsAffx.7527.1.S1_x_at1/112+10034582..10038860hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2652.1.S1_at--1042--8191Chr02:10011143..10011167 (25 bp)
GGAAGTATCCCTGATGAGCTGTCAT
LOC_Os02g17400
OsAffx.2652.1.S1_at--952--5891Chr02:10011128..10011152 (25 bp)
GAGCTGTCATCTCTAACTGGGCTAG
LOC_Os02g17400
OsAffx.2652.1.S1_at--411--2551Chr02:10011114..10011138 (25 bp)
AACTGGGCTAGTCAACCTGAACCTG
LOC_Os02g17400
OsAffx.2652.1.S1_at--64--2351Chr02:10011039..10011063 (25 bp)
AAAGCTGGAATCTCTCGACTTGTCG
LOC_Os02g17400
OsAffx.2652.1.S1_at--346--7191Chr02:10011018..10011042 (25 bp)
GTCGATTAACGTGCTTTCTGGTGAA
LOC_Os02g17400
OsAffx.2652.1.S1_at--727--10771Chr02:10010963..10010987 (25 bp)
TTGAGTCAACTGAACTTGTCCTACA
LOC_Os02g17400
OsAffx.2652.1.S1_at--191--3091Chr02:10010922..10010946 (25 bp)
AATACCTTCAGGGAACCAGCTTCAG
LOC_Os02g17400
OsAffx.2652.1.S1_at--63--10551Chr02:10010902..10010926 (25 bp)
TTCAGGCTCTTGCTAATCCAGCGTA
LOC_Os02g17400
OsAffx.2652.1.S1_at--107--1431Chr02:10010815..10010839 (25 bp)
AGAACAGAACTAGCCAGCCTGATCT
LOC_Os02g17400
OsAffx.2652.1.S1_at--1135--5611Chr02:10010768..10010792 (25 bp)
GACACAATGTCGTTTTACCTTGGTC
LOC_Os02g17400
OsAffx.2652.1.S1_at--718--1731Chr02:10010752..10010776 (25 bp)
ACCTTGGTCTTGCTTTGGGATTTGT
LOC_Os02g17400
Target Sequence 
GGAAGTATCCCTGATGAGCTGTCATCTCTAACTGGGCTAGTCAACCTGAACCTGTCCATGAACCGTCTTACCGGGACAAT
TCCTCGGAAAATTGGAGCTTTACAAAAGCTGGAATCTCTCGACTTGTCGATTAACGTGCTTTCTGGTGAAATCCCTTCAA
GTTTGTCAGATTTAACTTCATTGAGTCAACTGAACTTGTCCTACAATAATCTATCAGGAAGAATACCTTCAGGGAACCAG
CTTCAGGCTCTTGCTAATCCAGCGTACATCTACATTGGCAATGCTGGACTTTGTGGCCCTCCTCTGCAAAAAAATTGTTC
ATCCGAAAAGAACAGAACTAGCCAGCCTGATCTTCACGAAGGCAAAGGTTTATCTGACACAATGTCGTTTTACCTTGGTC
TTGCTTTGGGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis