Browse Element(s) Details


Os.27334.1.S1_at

Description gb:AK102828.1
DB_XREF= gi:32988037
TID=Os.27334.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109D12, full insert sequence.
FL= gb:AK102828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1735011/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17330Os.17869.1.S1_at11/112+9950652..9954958Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor, putative, expressed
LOC_Os02g17340OsAffx.2651.2.S1_s_at11/112+9961171..9963169hypothetical protein
LOC_Os02g17350Os.27334.1.S1_at11/112+9972702..9978097VHS domain containing protein, expressed
LOC_Os02g17360Os.27024.1.S1_at11/112+9981496..9985904pentatricopeptide, putative, expressed
LOC_Os02g17370Os.9047.1.S1_at11/112+9988862..9990641expressed protein
LOC_Os02g17380Os.16591.1.S1_at11/112+9994013..9998242expressed protein
LOC_Os02g17390Os.9729.1.S1_a_at10/112+10001474..10010226Peroxisomal fatty acid beta-oxidation multifunctional protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27334.1.S1_at--235--8551Chr02:9977498..9977522 (25 bp)
TGGAGCTTACTACATCCCGAATGCG
LOC_Os02g17350
Os.27334.1.S1_at--3--4211Chr02:9977513..9977537 (25 bp)
CCCGAATGCGGCGTATGCTTATGTT
LOC_Os02g17350
Os.27334.1.S1_at--522--4571Chr02:9977539..9977563 (25 bp)
GCGCGAATGAGCTTACCCAGAGGAT
LOC_Os02g17350
Os.27334.1.S1_at--1077--4171Chr02:9977554..9977578 (25 bp)
CCCAGAGGATGAATGCGGTTTCGGT
LOC_Os02g17350
Os.27334.1.S1_at--46--2491Chr02:9977665..9977689 (25 bp)
AACAGAACAAACCTGCAGCTGGCAA
LOC_Os02g17350
Os.27334.1.S1_at--123--6571Chr02:9977727..9977751 (25 bp)
GATTCATATTTTCTGGTCATTTGCA
LOC_Os02g17350
Os.27334.1.S1_at--915--4731Chr02:9977752..9977776 (25 bp)
GCTGCAAAAACTTTTCCTGGCAGTA
LOC_Os02g17350
Os.27334.1.S1_at--1130--9751Chr02:9977812..9977836 (25 bp)
TAATCCTTATCCTTATTGCCACTTT
LOC_Os02g17350
Os.27334.1.S1_at--308--9211Chr02:9977828..9977852 (25 bp)
TGCCACTTTTTGTGCGACGCAAGAA
LOC_Os02g17350
Os.27334.1.S1_at--1003--5291Chr02:9977850..9977874 (25 bp)
GAAGGCATACTACCCTATTGATGTA
LOC_Os02g17350
Os.27334.1.S1_at--93--8931Chr02:9977921..9977945 (25 bp)
TGAGCCTTGAGATGCTTCTGGTGCC
LOC_Os02g17350
Target Sequence 
TGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGG
TTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCC
AAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAGATTCATATTT
TCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAATTTTTTNCTAGTTTTGCAGAAAGATAATACATAATC
CTTATCCTTATTGCCACTTTTTGTGCGACGCAAGAAGGCATACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGT
AGGGATATAAATTGGAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis