Browse Element(s) Details


Os.17869.1.S1_at

Description gb:AK061985.1
DB_XREF= gi:32972003
TID=Os.17869.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B05, full insert sequence.
FL= gb:AK099165.1 gb:AK061985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1733011/11Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17304Os.54023.1.S1_at11/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.25952.1.S1_s_at2/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.13573.1.S1_at1/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17320Os.5917.1.S1_a_at11/112+9928817..9937359uridine kinase family protein, expressed
LOC_Os02g17330Os.17869.1.S1_at11/112+9950652..9954958Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor, putative, expressed
LOC_Os02g17340OsAffx.2651.2.S1_s_at11/112+9961171..9963169hypothetical protein
LOC_Os02g17350Os.27334.1.S1_at11/112+9972702..9978097VHS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046654biological_processtetrahydrofolate biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0008696molecular_function4-amino-4-deoxychorismate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17869.1.S1_at--393--6191Chr02:9951212..9951236 (25 bp)
GAGGACATGAGATCCGGTCCACCTT
LOC_Os02g17330
Os.17869.1.S1_at--100--551Chr02:9951179..9951203 (25 bp)
ATCCCTGTCTCCTATTGAAACTGCT
LOC_Os02g17330
Os.17869.1.S1_at--360--2091Chr02:9951153..9951177 (25 bp)
ACATCTCACCGATCTTTCTACAGAT
LOC_Os02g17330
Os.17869.1.S1_at--437--10531Chr02:9951016..9951040 (25 bp)
TTCAGTTGCAACCTTGTGCTCTCAG
LOC_Os02g17330
Os.17869.1.S1_at--737--8692Chr02:9920348..9920372 (25 bp)
TGTGCTCTCAGACATCTTAATCCTG
NONE
Os.17869.1.S1_at--47--1571Chr02:9950970..9950994 (25 bp)
AGCTTTGCTATCCAGATGCTACACC
LOC_Os02g17330
Os.17869.1.S1_at--1055--8891Chr02:9950835..9950859 (25 bp)
TGAGTACCTCATACTGCAGCACAGA
LOC_Os02g17330
Os.17869.1.S1_at--363--5711Chr02:9950812..9950836 (25 bp)
GACTCACAGAGGATGGCTTGCAAGC
LOC_Os02g17330
Os.17869.1.S1_at--959--3431Chr02:9950785..9950809 (25 bp)
CAGATTGCCAGAACCTTGAGCTCAA
LOC_Os02g17330
Os.17869.1.S1_at--544--10751Chr02:9950770..9950794 (25 bp)
TTGAGCTCAAGCCACCGAACTAAGT
LOC_Os02g17330
Os.17869.1.S1_at--324--1571Chr02:9950678..9950702 (25 bp)
AGCTACTGCTTCTTTCTTTGGTAAG
LOC_Os02g17330
Target Sequence 
GAGGACATGAGATCCGGTCCACCTTCAGTCCGCATCCCTGTCTCCTATTGAAACTGCTGACATCTCACCGATCTTTCTAC
AGATATGTGATAAATAACAGAACATGTATTATTAGGAACAAGGAACGATTACTAGAATTCTGAGACTAGTCACGTAAAGC
TACACTCTATATTTGCATAATTCAGAAGGTGTGTTCTTCAGTTGCAACCTTGTGCTCTCAGACATCTTAATCCTGAATTT
AAAGCTTTGCTATCCAGATGCTACACCAAGCAAGGGGGGCAAGGATTTTGGTAGCTGTTGATCAATGTAGAGAAGATGTG
GATATTGTACAAAGAAACCTGTGAAACTGTTAAATTTGTACAGGTTTTATTATGTCTTGAGTACCTCATACTGCAGCACA
GACTCACAGAGGATGGCTTGCAAGCCACAGATTGCCAGAACCTTGAGCTCAAGCCACCGAACTAAGTCAGTTTATTATGT
TTTACCTTTATTCAGAAGGAATAGTTCCGATTCAGCAACANCAACTTGATTCAGAGCTACTGCTTCTTTCTTTGGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis