Browse Element(s) Details


Os.54023.1.S1_at

Description gb:AK101376.1
DB_XREF= gi:32986585
TID=Os.54023.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036C01, full insert sequence.
FL= gb:AK101376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1730411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17304Os.54023.1.S1_at11/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.25952.1.S1_s_at2/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.13573.1.S1_at1/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17320Os.5917.1.S1_a_at11/112+9928817..9937359uridine kinase family protein, expressed
LOC_Os02g17330Os.17869.1.S1_at11/112+9950652..9954958Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54023.1.S1_at--722--10151Chr02:9923825..9923849 (25 bp)
TATCCCATCTCCGATCATTGCATAT
LOC_Os02g17304
Os.54023.1.S1_at--345--5571Chr02:9923790..9923814 (25 bp)
GAAAGTTTGCCAGTAGTCCCTTCAG
LOC_Os02g17304
Os.54023.1.S1_at--1137--2431Chr02:9923758..9923782 (25 bp)
AAAATGTCAAGTCCTGCGTGTGCTG
LOC_Os02g17304
Os.54023.1.S1_at--927--7451Chr02:9923741..9923765 (25 bp)
GTGTGCTGGCTATAAAACTTCGTCT
LOC_Os02g17304
Os.54023.1.S1_at--182--2691Chr02:9923622..9923646 (25 bp)
AAGCTGCAGCATCTACAAACACTTG
LOC_Os02g17304
Os.54023.1.S1_at--1031--3311Chr02:9923603..9923627 (25 bp)
CACTTGATCTGGCATATACTCGTAT
LOC_Os02g17304
Os.54023.1.S1_at--507--2031Chr02:9923572..9923596 (25 bp)
ACTACCTGCAAGCATTGTCCAGCTA
LOC_Os02g17304
Os.54023.1.S1_at--181--9851Chr02:9923549..9923573 (25 bp)
TACAGAAACTGGTGCACCTTCTCAT
LOC_Os02g17304
Os.54023.1.S1_at--326--1131Chr02:9923515..9923539 (25 bp)
AGTGCCGCTGCCTGACGAAATAGGA
LOC_Os02g17304
Os.54023.1.S1_at--369--6131Chr02:9923352..9923376 (25 bp)
GAGGGCCACAGGACAGCATGCATCT
LOC_Os02g17304
Os.54023.1.S1_at--319--2711Chr02:9923316..9923340 (25 bp)
AAGCTTGTCAAGTGCAGCCTCCAAT
LOC_Os02g17304
Target Sequence 
TATCCCATCTCCGATCATTGCATATGTTTAAGCATGAAAGTTTGCCAGTAGTCCCTTCAGAATTTGCAAAATGTCAAGTC
CTGCGTGTGCTGGCTATAAAACTTCGTCTGGGGGACAACTATATTAAACATGTTGGACATTTTTGTGAACTTAAGTACTT
GAGAATCAAAGGAGGTATCCACAAGCTCCCAGAAGAGATTGGTAAGCTGCAGCATCTACAAACACTTGATCTGGCATATA
CTCGTATTGAAAAACTACCTGCAAGCATTGTCCAGCTACAGAAACTGGTGCACCTTCTCATCCCTTTTGGAGTGCCGCTG
CCTGACGAAATAGGAAATCTGCAAGCTCTGGAGGTGTTGTCGGGTATTGATCTAGATAGAGCATCAGTAAAATCTATCTA
TGGGCTAGGTGAGCTGAGCAAACTGAGAGATGTTCGAATCTGGTGGTCAGATTCCAACGAAGATAACAGCAAGGAGGGCC
ACAGGACAGCATGCATCTCCTCTCTCTCCAAGCTTGTCAAGTGCAGCCTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis