Browse Element(s) Details


OsAffx.2651.2.S1_s_at

Description tigr:9630.m01623
TID=OsAffx.2651.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1734011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17320Os.5917.1.S1_a_at11/112+9928817..9937359uridine kinase family protein, expressed
LOC_Os02g17330Os.17869.1.S1_at11/112+9950652..9954958Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor, putative, expressed
LOC_Os02g17340OsAffx.2651.2.S1_s_at11/112+9961171..9963169hypothetical protein
LOC_Os02g17350Os.27334.1.S1_at11/112+9972702..9978097VHS domain containing protein, expressed
LOC_Os02g17360Os.27024.1.S1_at11/112+9981496..9985904pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2651.2.S1_s_at--887--672Chr02:9910056..9910080 (25 bp)
ATGACAGGTGGGACCTCCGGAAGAG
NONE
OsAffx.2651.2.S1_s_at--290--6112Chr02:9910078..9910102 (25 bp)
GAGGACCCGAGGTTCGCCGGACGAT
NONE
OsAffx.2651.2.S1_s_at--887--572Chr02:9910101..9910125 (25 bp)
ATGCCCGGTGGGACCTCCAGAAGAA
NONE
OsAffx.2651.2.S1_s_at--565--5112Chr02:9910315..9910339 (25 bp)
GCACATGCTGTACGCGGGACCCAGT
NONE
OsAffx.2651.2.S1_s_at--576--9092Chr02:9910320..9910344 (25 bp)
TGCTGTACGCGGGACCCAGTTTCCT
NONE
OsAffx.2651.2.S1_s_at--377--9232Chr02:9910385..9910409 (25 bp)
TCCTTCGGTCCTCCCAGAAGGAGGA
NONE
OsAffx.2651.2.S1_s_at--913--9312Chr02:9910396..9910420 (25 bp)
TCCCAGAAGGAGGACGAGCAGCAGT
NONE
OsAffx.2651.2.S1_s_at--181--4752Chr02:9910447..9910471 (25 bp)
GCTGATATTCTTGGCGGGCCTCGTG
NONE
OsAffx.2651.2.S1_s_at--1132--7552Chr02:9910462..9910486 (25 bp)
GGGCCTCGTGCTACGGTTACGTCAG
NONE
OsAffx.2651.2.S1_s_at--894--3972Chr02:9910468..9910492 (25 bp)
CGTGCTACGGTTACGTCAGTTGGAA
NONE
OsAffx.2651.2.S1_s_at--841--4012Chr02:9910481..9910505 (25 bp)
CGTCAGTTGGAACGTGTACGAGTTA
NONE
Target Sequence 
ATGACAGGTGGGACCTCCGGAAGAGGACCCGAGGTTCGCCGGACGATGCCCGGTGGGACCTCCAGAAGAAGAGGAGGGAG
GAAGAGGAGAGGAATGGCGGTGGGTCGCCGGAGCCGGAGCTGGGGAAGAAGAATGATGAGGAGGAGAAGAAGAAGGTGGT
GGTGGTGGTGGCGAGGGGGGAAGAAGTAGAAGAAGAGGAGGTGAAGAGGGGGAAGAAGTGGTGCGCCGGCATGCGCGTGC
CGTGGGTGGAGGAGGGGCCGCACATGCTGTACGCGGGACCCAGTTTCCTCGCCGGCGCTGCACCGGATCCCAGCTCTCTC
CCCATCCCCTCCTTCGGTCCTCCCAGAAGGAGGACGAGCAGCAGTGGCGGTGGTGTGGCCGTGCGCGTCGCGCTGATATT
CTTGGCGGGCCTCGTGCTACGGTTACGTCAGTTGGAACGTGTACGAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2651.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis