Browse Element(s) Details


OsAffx.24292.1.S1_at

Description tigr:9630.m01635
TID=OsAffx.24292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1746011/11Tesmin/TSO1-like CXC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17420Os.28943.1.S1_x_at4/112+10021994..10025227retrotransposon protein, putative, unclassified
LOC_Os02g17430NANA2+10026050..10031775retrotransposon protein, putative, unclassified
LOC_Os02g17440OsAffx.20736.1.S1_at2/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.27520.8.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440Os.52323.1.S1_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17440OsAffx.7527.1.S1_x_at1/112+10034582..10038860hypothetical protein
LOC_Os02g17450OsAffx.12942.1.S1_at11/112+10040212..10042759hypothetical protein
LOC_Os02g17460OsAffx.24292.1.S1_at11/112+10043084..10050349Tesmin/TSO1-like CXC domain containing protein
LOC_Os02g17470Os.47909.1.A1_at11/112+10051269..10056495Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os02g17480OsAffx.2654.1.S1_at11/112+10066676..10067446expressed protein
LOC_Os02g17490Os.54774.1.S1_x_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17490Os.54774.1.S1_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17500Os.11185.1.S1_a_at11/112+10074588..10081476Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24292.1.S1_at--301--1311Chr02:10045599..10045623 (25 bp)
AGATGTTTCACAGCTTGCATCCTCT
LOC_Os02g17460
OsAffx.24292.1.S1_at--772--711Chr02:10045148..10045544 (25 bp)
ATGATCTATAGGTCTCCACTAGCAA
LOC_Os02g17460
OsAffx.24292.1.S1_at--1145--3691Chr02:10045130..10045154 (25 bp)
CTAGCAAACACTATCCCTCTTATTG
LOC_Os02g17460
OsAffx.24292.1.S1_at--272--1551Chr02:10045057..10045077 (21 bp)
AGCATTCCTCACAAAAGCTGGCAAT
LOC_Os02g17460
OsAffx.24292.1.S1_at--1073--5391Chr02:10043612..10043636 (25 bp)
GAAGCTTCTCTAAAGGACATCCAAA
LOC_Os02g17460
OsAffx.24292.1.S1_at--238--2951Chr02:10043585..10043609 (25 bp)
AAGGCCTGTATAGATCGTCAGAACA
LOC_Os02g17460
OsAffx.24292.1.S1_at--438--4531Chr02:10043547..10043571 (25 bp)
GCCCCATCTAGCTAACTCTTTTAAA
LOC_Os02g17460
OsAffx.24292.1.S1_at--632--2811Chr02:10043524..10043548 (25 bp)
AAGATTCTAGGCCTGCATCACCAGG
LOC_Os02g17460
OsAffx.24292.1.S1_at--100--1471Chr02:10043444..10043468 (25 bp)
AGAAGTCCATTTGTGGTGCCTTCAC
LOC_Os02g17460
OsAffx.24292.1.S1_at--507--7791Chr02:10043430..10043454 (25 bp)
GGTGCCTTCACGTGATCAGGATATT
LOC_Os02g17460
OsAffx.24292.1.S1_at--34--4631Chr02:10043361..10043385 (25 bp)
GCGAGATTATCTTCGTGTGCTTATC
LOC_Os02g17460
Target Sequence 
AGATGTTTCACAGCTTGCATCCTCTTGCACAGGATTTGGAGGGGATATTGCTATCAATTACCAAAGCAAATCATCTGAAA
TGATCTATAGGTCTCCACTAGCAAACACTATCCCTCTTATTGAAGTCAATGATCTTGTCAAGAATGCGTTGGTTGCGTGC
AGAAAGGCACCAGAAGCATTCCTCACAAAAGCTGGCAATAAAGTGGAGATGCAAGCAGAGAAGCAATATCAGACAAATGA
TGAAATAAACAATGATAAGACCAAAGAGCAAAACTTGAAGGAAGCTTCTCTAAAGGACATCCAAAACAAGGCCTGTATAG
ATCGTCAGAACATTAATGGAACAGAGCCCCATCTAGCTAACTCTTTTAAAGATTCTAGGCCTGCATCACCAGGAACACAA
GCACTAATGTGTGATGAAATGGATACTACATTCGGAAATGAGGATTATAGAAGTCCATTTGTGGTGCCTTCACGTGATCA
GGATATTTCTGAGCTAAATGCTGATCAAGAAAGAATAGTATTGACAGGGCTGCGAGATTATCTTCGTGTGCTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis