Browse Element(s) Details


Os.48083.1.A1_at

Description gb:CB673118
DB_XREF= gi:29676843
DB_XREF=OSJNEe07I01.r
CLONE=OSJNEe07I01
TID=Os.48083.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48083 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_563966.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1752010/11Cytochrome C biogenesis protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17480OsAffx.2654.1.S1_at11/112+10066676..10067446expressed protein
LOC_Os02g17490Os.54774.1.S1_x_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17490Os.54774.1.S1_at2/112+10070458..10071107retrotransposon, putative, centromere-specific
LOC_Os02g17500Os.11185.1.S1_a_at11/112+10074588..10081476Sugar transporter family protein, expressed
LOC_Os02g17520Os.48083.1.A1_at10/112+10084264..10087915Cytochrome C biogenesis protein, expressed
LOC_Os02g17534Os.17619.1.S1_at10/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17534OsAffx.15364.2.S1_x_at1/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17550NANA2+10100554..10104501transposon protein, putative, Mutator sub-class
LOC_Os02g17560OsAffx.24294.1.S1_at11/112+10105120..10105695hypothetical protein
LOC_Os02g17570OsAffx.10632.1.S1_at2/112+10108866..10109930retrotransposon protein, putative, unclassified
LOC_Os02g17580OsAffx.28496.1.S1_at11/112+10110994..10113779hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009790biological_processembryonic development
GO:0017004biological_processcytochrome complex assembly
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48083.1.A1_at--289--4791NONE
GCTGCCATATGGTTATCACCGGTGA
NONE
Os.48083.1.A1_at--384--3391Chr02:10087374..10087398 (25 bp)
CAGCTGGTGTCTGGGCTTACCAAAA
LOC_Os02g17520
Os.48083.1.A1_at--415--6191Chr02:10087408..10087432 (25 bp)
GAGGACTAACGTTCACATCATGGCT
LOC_Os02g17520
Os.48083.1.A1_at--811--411Chr02:10087424..10087448 (25 bp)
ATCATGGCTCTGAATCTTGTCCGGG
LOC_Os02g17520
Os.48083.1.A1_at--312--8611Chr02:10087523..10087547 (25 bp)
TGGTGGCCAGGCAAATGATTTTTCA
LOC_Os02g17520
Os.48083.1.A1_at--932--7251Chr02:10087577..10087601 (25 bp)
GTCCTATTTACTGGTGGCTTCACAA
LOC_Os02g17520
Os.48083.1.A1_at--1013--271Chr02:10087695..10087719 (25 bp)
ATAGGCAGCTTCTGTCAGTATGGTA
LOC_Os02g17520
Os.48083.1.A1_at--1013--7451Chr02:10087727..10087751 (25 bp)
GTGTGCTACTCAGAACTCTGTACTG
LOC_Os02g17520
Os.48083.1.A1_at--332--7431Chr02:10087761..10087785 (25 bp)
GTGTTTCTGACTGAACTCTGTTTTG
LOC_Os02g17520
Os.48083.1.A1_at--115--6811Chr02:10087780..10087804 (25 bp)
GTTTTGTCTTTCATCAGAAGCTCAT
LOC_Os02g17520
Os.48083.1.A1_at--142--5411Chr02:10087796..10087820 (25 bp)
GAAGCTCATGTCTGCTGATAAGCTG
LOC_Os02g17520
Target Sequence 
GCTGCCATATGGTTATCACCGGTGATCGTGGGTGGCGTAGCAGCTGGTGTCTGGGCTTACCAAAAGCACAGGCAGAGGAC
TAACGTTCACATCATGGCTCTGAATCTTGTCCGGGGGGTNTCCACTGACACCAAGGGAGAAGGAGANCATGCTTGACGTA
CTTACACCACCACCTCCTGCCAACAAGTGGTGGTGGCCAGGCAAATGATTTTTCATGTGCTTAATGAACACGAAGNACTN
CTCCTGTCCTATTTACTGGTGGCTTCACAAACTTGATAAGGAATTCAGGATTGCTAATTTTNAGGGCACATTCTTTCTGA
ATGTCACACTTATCAACCTAAGATCGCGTATTTTGTAGTNGTTGTATAGGCAGCTTCTGTCAGTATGGTAAACAACAGTG
TGCTACTCAGAACTCTGTACTGCATTCAGCAGTGTTTCTGACTGAACTCTGTTTTGTCTTTCATCAGAAGCTCATGTCTG
CTGATAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48083.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis