Browse Element(s) Details


OsAffx.28496.1.S1_at

Description tigr:9630.m01647
TID=OsAffx.28496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1758011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17520Os.48083.1.A1_at10/112+10084264..10087915Cytochrome C biogenesis protein, expressed
LOC_Os02g17534Os.17619.1.S1_at10/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17534OsAffx.15364.2.S1_x_at1/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17550NANA2+10100554..10104501transposon protein, putative, Mutator sub-class
LOC_Os02g17560OsAffx.24294.1.S1_at11/112+10105120..10105695hypothetical protein
LOC_Os02g17570OsAffx.10632.1.S1_at2/112+10108866..10109930retrotransposon protein, putative, unclassified
LOC_Os02g17580OsAffx.28496.1.S1_at11/112+10110994..10113779hypothetical protein
LOC_Os02g17590NANA2+10121710..10122009hypothetical protein
LOC_Os02g17600Os.17619.1.S1_at2/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17600OsAffx.15364.2.S1_x_at1/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17610NANA2+10134295..10134525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28496.1.S1_at--342--9231Chr02:10112616..10112640 (25 bp)
TCCATACTCAGGACCCACTGGAAAG
LOC_Os02g17580
OsAffx.28496.1.S1_at--443--1991Chr02:10112400..10112609 (25 bp)
ACTCCGCGTCTCATGAAGAGAAGGA
LOC_Os02g17580
OsAffx.28496.1.S1_at--267--4231Chr02:10112118..10112142 (25 bp)
CCGGGCGGTGACATTGTCGGCAAAC
LOC_Os02g17580
OsAffx.28496.1.S1_at--540--8351Chr02:10112115..10112139 (25 bp)
GGCGGTGACATTGTCGGCAAACCAG
LOC_Os02g17580
OsAffx.28496.1.S1_at--785--4491Chr02:10111425..10111449 (25 bp)
GCCGGTGGTCATTCTAGCGATTACG
LOC_Os02g17580
OsAffx.28496.1.S1_at--690--10571Chr02:10111414..10111438 (25 bp)
TTCTAGCGATTACGCTTGAGCCGCA
LOC_Os02g17580
OsAffx.28496.1.S1_at--1014--8911Chr02:10111189..10111422 (25 bp)
TGAGCCGCACGTGCTGGAGACGAAG
LOC_Os02g17580
OsAffx.28496.1.S1_at--929--2771Chr02:10111065..10111089 (25 bp)
AAGAGCTACTGCACGGCGATGGCGG
LOC_Os02g17580
OsAffx.28496.1.S1_at--533--9011Chr02:10111035..10111059 (25 bp)
TGCAAGGAGCTACGAGTTCCCTCAG
LOC_Os02g17580
OsAffx.28496.1.S1_at--482--971Chr02:10111031..10111055 (25 bp)
AGGAGCTACGAGTTCCCTCAGAGAT
LOC_Os02g17580
OsAffx.28496.1.S1_at--395--1871Chr02:10111024..10111048 (25 bp)
ACGAGTTCCCTCAGAGATCCCAAGG
LOC_Os02g17580
Target Sequence 
TCCATACTCAGGACCCACTGGAAAGCGACGAACTCCGCGTCTCATGAAGAGAAGGAAAATCTTCGCAGGATGGCGCGGGC
AAAGGTGGCGCAAGGTCGCGAGATGGAGGAGGCCCGGGCGGTGACATTGTCGGCAAACCAGCGTGCCGAGCAGCTGGCGC
GCGATCTGGCGGAGGCCCGTGAGGACCTCCTGAAGATGAGGGAGCTGGTAGCTGGCAACGAGAGAGATGTTGATGTCGAG
GATGTCCAACAGCGTGGGCAGCCTGATACGCCGGTGGTCATTCTAGCGATTACGCTTGAGCCGCACGTGCTGGAGACGAA
GCTCGAGGTGGCCGAACTCGAAAGGGCTATGGTGGAGGTGAAGGAAGACCAGGCCGTGGAAGCCCTCCGAGGTCACGAGG
TGTGGTTCAACTCATACCTCAAGAGCTACTGCACGGCGATGGCGGGGGTTTGCAAGGAGCTACGAGTTCCCTCAGAGATC
CCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis