Browse Element(s) Details


OsAffx.2656.1.S1_at

Description tigr:9630.m01658
TID=OsAffx.2656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1769010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17670OsAffx.17842.1.S1_at3/112+10173442..10174404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17690OsAffx.2656.1.S1_at10/112+10197327..10199936hypothetical protein
LOC_Os02g17700Os.49441.1.S1_at11/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17700Os.24140.1.A1_at1/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2656.1.S1_at--1003--3251Chr02:10197367..10197391 (25 bp)
CAACGTGGTGGTGGCAAGCTGCACT
LOC_Os02g17690
OsAffx.2656.1.S1_at--1094--4751Chr02:10197384..10197408 (25 bp)
GCTGCACTGCGGTGGACAGATCTGA
LOC_Os02g17690
OsAffx.2656.1.S1_at--3--2411Chr02:10197412..10197436 (25 bp)
AAACAATGAGCTCATCGCGGCGGCG
LOC_Os02g17690
OsAffx.2656.1.S1_at--841--7991Chr02:10197479..10197503 (25 bp)
GGATGGCTTCGTCCCTACAGCGGTA
LOC_Os02g17690
OsAffx.2656.1.S1_at--591--9311NONE
TCCCTACAGCGGTACAGGGTATGTA
NONE
OsAffx.2656.1.S1_at--156--5031Chr02:10198722..10198746 (25 bp)
GCAGAAGCCGAGAATAACACCTATC
LOC_Os02g17690
OsAffx.2656.1.S1_at--67--2491Chr02:10198737..10198761 (25 bp)
AACACCTATCTTAGCAGTGGATCTA
LOC_Os02g17690
OsAffx.2656.1.S1_at--1079--8411Chr02:10199681..10199702 (22 bp)
GGCCAGTTTAAGTGTCTTGCGTCAA
LOC_Os02g17690
OsAffx.2656.1.S1_at--1161--4371Chr02:10199750..10199774 (25 bp)
CCAAGAGAGTGGTCGTCTAGAGTCG
LOC_Os02g17690
OsAffx.2656.1.S1_at--970--5791Chr02:10199835..10199859 (25 bp)
GACGCGTACGCCGAGATCATCGAGA
LOC_Os02g17690
OsAffx.2656.1.S1_at--240--6051Chr02:10199847..10199871 (25 bp)
GAGATCATCGAGAGTCACGCGCGCA
LOC_Os02g17690
Target Sequence 
CAACGTGGTGGTGGCAAGCTGCACTGCGGTGGACAGATCTGATAGAAACAATGAGCTCATCGCGGCGGCGGCATCAACAA
CTAGGAGGAGGAGGAGGAGTGAGCAGCGTTGGGGATGGCTTCGTCCCTACAGCGGTACAGGGTATGTACGATGAATCGAA
GTTACTAGCAGAAGCCGAGAATAACACCTATCTTAGCAGTGGATCTACAAGTTTTAGGGCCAGTTTAAGTGTCTTGCGTC
AACTAATAAGAAACCGGAAACCGGAGAGAGTATGGAGTGACACGATAAACCAAGAGAGTGGTCGTCTAGAGTCGCGGGGC
GGGGGATCCACCGTTGGTGAATGTAAGGAGGAGGCCGATGAGGAGGCGGTGGACGACGCGTACGCCGAGATCATCGAGAG
TCACGCGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis