Browse Element(s) Details


OsAffx.11215.2.S1_at

Description tigr:9629.m02557
TID=OsAffx.11215.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2680411/11ZmEBE-1 protein, putative, expressed
LOC_Os01g2632011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26792OsAffx.21092.1.S1_s_at3/111+15105580..15106530wall-associated kinase-like 1, putative
LOC_Os01g26792OsAffx.21092.2.S1_at2/111+15105580..15106530wall-associated kinase-like 1, putative
LOC_Os01g26796NANA1+15111594..15112015NA
LOC_Os01g26800NANA1+15122506..15123203hypothetical protein
LOC_Os01g26804OsAffx.11215.2.S1_at11/111+15125211..15128500ZmEBE-1 protein, putative, expressed
LOC_Os01g26804OsAffx.11215.1.S1_at11/111+15125211..15128500ZmEBE-1 protein, putative, expressed
LOC_Os01g26804OsAffx.11215.2.S1_x_at7/111+15125211..15128500ZmEBE-1 protein, putative, expressed
LOC_Os01g26808OsAffx.20673.1.S1_x_at2/111+15136068..15138783retrotransposon protein, putative, unclassified
LOC_Os01g26808OsAffx.13714.1.S1_x_at1/111+15136068..15138783retrotransposon protein, putative, unclassified
LOC_Os01g26808OsAffx.15503.1.S1_x_at1/111+15136068..15138783retrotransposon protein, putative, unclassified
LOC_Os01g26808OsAffx.23445.1.S1_x_at1/111+15136068..15138783retrotransposon protein, putative, unclassified
LOC_Os01g26812OsAffx.2093.1.S1_at8/111+15145562..15146918hessian fly response gene 1 protein, putative
LOC_Os01g26816NANA1+15148704..15148985hypothetical protein
LOC_Os01g26820OsAffx.30226.1.S1_at1/111+15151549..15152459hypothetical protein
LOC_Os01g26820OsAffx.30226.1.S1_x_at1/111+15151549..15152459hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11215.2.S1_at--450--9852Chr01:15127142..15127328 (25 bp)
TATACTTCCTGGACGGTTTTGAACG
LOC_Os01g26804
OsAffx.11215.2.S1_at--20--3652Chr01:15127146..15127332 (25 bp)
CTTCCTGGACGGTTTTGAACGAGCA
LOC_Os01g26804
OsAffx.11215.2.S1_at--622--7712Chr01:15128111..15128135 (25 bp)
GGGTGGGCTCTTACCCAAAATCTCT
LOC_Os01g26804
OsAffx.11215.2.S1_at--508--8632Chr01:15128114..15128138 (25 bp)
TGGGCTCTTACCCAAAATCTCTGTT
LOC_Os01g26804
OsAffx.11215.2.S1_at--1145--8312Chr01:15128116..15128140 (25 bp)
GGCTCTTACCCAAAATCTCTGTTCA
LOC_Os01g26804
OsAffx.11215.2.S1_at--20--3772Chr01:15128118..15128142 (25 bp)
CTCTTACCCAAAATCTCTGTTCACT
LOC_Os01g26804
OsAffx.11215.2.S1_at--162--10452Chr01:15128121..15128145 (25 bp)
TTACCCAAAATCTCTGTTCACTAAT
LOC_Os01g26804
OsAffx.11215.2.S1_at--112--1812Chr01:15128123..15128147 (25 bp)
ACCCAAAATCTCTGTTCACTAATAT
LOC_Os01g26804
OsAffx.11215.2.S1_at--1094--2432Chr01:15128127..15128151 (25 bp)
AAAATCTCTGTTCACTAATATGGCA
LOC_Os01g26804
OsAffx.11215.2.S1_at--666--3052Chr01:15128129..15128153 (25 bp)
AATCTCTGTTCACTAATATGGCAGA
LOC_Os01g26804
OsAffx.11215.2.S1_at--744--6752Chr01:15128136..15128160 (25 bp)
GTTCACTAATATGGCAGAGAAGGCG
LOC_Os01g26804
Target Sequence 
TATACTTCCTGGACGGTTTTGAACGAGCAAACGGTGCTGCGGTTGCACCAGGTGCTTCTATTGACCCAGTTTCAGATGAC
AAAAGCCTACAGAGTATTACAGTTGAAGTGCTGTTGGACAGGGACAAGTGGAGATTGGTGGGTGTACTATGGCTTCAACG
GTGTTCCCACGGGGGTGGGCTCTTACCCAAAATCTCTGTTCACTAATATGGCAGAGAAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11215.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis