Browse Element(s) Details


OsAffx.21092.1.S1_s_at

Description gb:NM_194034.1
DB_XREF= gi:34915151
GEN=P0503E05.27
TID=OsAffx.21092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503E05.27 (P0503E05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2631011/11expressed protein
LOC_Os01g267923/11wall-associated kinase-like 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21092.1.S1_s_at--430--872Chr01:15106470..15106494 (25 bp)
ATGGCGACGCTGCATCTCGCACTCG
LOC_Os01g26792
OsAffx.21092.1.S1_s_at--813--8112Chr01:15106396..15106420 (25 bp)
GGACGTGAACATCACATATCCCTTT
LOC_Os01g26792
OsAffx.21092.1.S1_s_at--972--8972Chr01:15106391..15106415 (25 bp)
TGAACATCACATATCCCTTTGGCAT
LOC_Os01g26792
OsAffx.21092.1.S1_s_at--326--2671Chr01:14898013..14898037 (25 bp)
AAGCCGCCCAAGCTCTTCTTCGGTA
LOC_Os01g26310
OsAffx.21092.1.S1_s_at--483--1571Chr01:14898003..14898027 (25 bp)
AGCTCTTCTTCGGTAACACGACGGA
LOC_Os01g26310
OsAffx.21092.1.S1_s_at--674--7831Chr01:14897992..14898016 (25 bp)
GGTAACACGACGGAGATTTCTTATC
LOC_Os01g26310
OsAffx.21092.1.S1_s_at--651--6531Chr01:14897978..14898002 (25 bp)
GATTTCTTATCAATATCCATACGGA
LOC_Os01g26310
OsAffx.21092.1.S1_s_at--179--3571Chr01:14897961..14897985 (25 bp)
CATACGGATATGTCAGGGCCTCTGT
LOC_Os01g26310
OsAffx.21092.1.S1_s_at--748--751Chr01:14897952..14897976 (25 bp)
ATGTCAGGGCCTCTGTCGTCTTCAA
LOC_Os01g26310
OsAffx.21092.1.S1_s_at--161--1811Chr01:14897917..14897941 (25 bp)
ACCCCAGGATTGCTTGGCACCTATA
LOC_Os01g26310
OsAffx.21092.1.S1_s_at--1040--4331Chr01:14897914..14897938 (25 bp)
CCAGGATTGCTTGGCACCTATAGCA
LOC_Os01g26310
Target Sequence 
ATGGCGACGCTGCATCTCGCACTCGGCGTGCCTCCCTCTGCCCGTGATCTTCGTCACTGCCCCACTTCCTGCGGGGACGT
GAACATCACATATCCCTTTGGCATCGGCACCGGCTGCTTCCGGCCGGGCTTCGAGCTCATCTGCAACACCACCACCAAGC
CGCCCAAGCTCTTCTTCGGTAACACGACGGAGATTTCTTATCAATATCCATACGGATATGTCAGGGCCTCTGTCGTCTTC
AACATCGCCACCACCCCAGGATTGCTTGGCACCTATAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21092.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis