Browse Element(s) Details


OsAffx.23406.1.S1_at

Description tigr:9629.m02555
TID=OsAffx.23406.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2630011/11wall-associated kinase 1, putative, expressed
LOC_Os01g267885/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein
LOC_Os01g26259NANA1+14868841..14869235NA
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23406.1.S1_at--276--8972Chr01:15094869..15094893 (25 bp)
TGAAACCCATGTTGTCACCATTGTG
LOC_Os01g26788
OsAffx.23406.1.S1_at--234--7671Chr01:14886857..14886881 (25 bp)
GGGTACTTGGATCCCGAATACTATC
LOC_Os01g26300
OsAffx.23406.1.S1_at--1056--5211Chr01:14886842..14886866 (25 bp)
GAATACTATCACACAGGCCAGTTAA
LOC_Os01g26300
OsAffx.23406.1.S1_at--598--7072Chr01:15094763..15094787 (25 bp)
GTAATACTAGTTGAGCTCCTAACAA
LOC_Os01g26788
OsAffx.23406.1.S1_at--332--3072Chr04:8442654..8442879 (25 bp)
AATCTTTCTCAATTGCTCTGGTGAA
NONE
OsAffx.23406.1.S1_at--791--2271Chr01:14886723..14886747 (25 bp)
AAATCTGTGTCATTACTTCCTTCAA
LOC_Os01g26300
OsAffx.23406.1.S1_at--235--391Chr01:14886615..14886639 (25 bp)
ATCACTTGCTGAGGCTTGCTTGAGA
LOC_Os01g26300
OsAffx.23406.1.S1_at--1061--1151Chr01:14886553..14886577 (25 bp)
AGTCAAGATTACAGCTCCTAAGAGC
LOC_Os01g26300
OsAffx.23406.1.S1_at--982--2672Chr01:15094459..15094483 (25 bp)
AAGCGATGCAATTGTTTCCTTCCGT
LOC_Os01g26788
OsAffx.23406.1.S1_at--94--6832Chr01:15094436..15094460 (25 bp)
GTTTATGACTCTACTTCTTTCACTC
LOC_Os01g26788
OsAffx.23406.1.S1_at--121--6572Chr01:15094385..15094409 (25 bp)
GATTCATTAACTCAGCTTGCCTCTA
LOC_Os01g26788
Target Sequence 
TGAAACCCATGTTGTCACCATTGTGCAAGGTACATTTGGGTACTTGGATCCCGAATACTATCACACAGGCCAGTTAACTG
CAAAGAGTGATGTCTATAGTTTTGGTGTAATACTAGTTGAGCTCCTAACAAGGAAGAAACCAATCTTTCTCAATTGCTCT
GGTGAAAAGCAAAATCTGTGTCATTACTTCCTTCAAAGTTTACGGGATAAGACAACAACTGATATGTTGGATTCTCAGGT
AGTTGAGGAAGGAAACCTAGGAGAAATTGATGAGTTTGTATCACTTGCTGAGGCTTGCTTGAGACTTAGAGGGGAAGACA
GACCGACCATGAAAGAAGTGGAGTCAAGATTACAGCTCCTAAGAGCCAATATTACAAAGAAGATTCAAGATGAGTCACAA
AAGAACGTGGAAGCGATGCAATTGTTTCCTTCCGTTTATGACTCTACTTCTTTCACTCAGAATGTTGACATCGGAATGGA
TGCTGATTCATTAACTCAGCTTGCCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis