Browse Element(s) Details


OsAffx.8858.1.S1_x_at

Description gb:NM_194031.1
DB_XREF= gi:34915145
GEN=P0503E05.24
TID=OsAffx.8858.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503E05.24 (P0503E05.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g262505/11hypothetical protein
LOC_Os03g147201/11Transcription initiation factor IIF, alpha subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26210OsAffx.21096.1.S1_at11/111+14838579..14840751Calcium binding EGF domain containing protein, expressed
LOC_Os01g26210OsAffx.21096.2.S1_x_at11/111+14838579..14840751Calcium binding EGF domain containing protein, expressed
LOC_Os01g26224Os.45976.1.S1_x_at2/111+14843538..14852706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26240OsAffx.19542.3.S1_x_at6/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26240OsAffx.9949.1.S1_at1/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein
LOC_Os01g26259NANA1+14868841..14869235NA
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8858.1.S1_x_at--612--5931Chr01:14865433..14865457 (25 bp)
GAGCAGACGGGAAGCGGGCAAGCAC
LOC_Os01g26250
OsAffx.8858.1.S1_x_at--523--7271Chr01:14865527..14865551 (25 bp)
GTCCATGGCCGTAGATCTCGCGCCA
LOC_Os01g26250
OsAffx.8858.1.S1_x_at--326--3931Chr01:14865571..14865645 (25 bp)
CGGCGGGAGTGTGACGGCGACGGGC
LOC_Os01g26250
OsAffx.8858.1.S1_x_at--875--514Chr10:11699953..11699975 (23 bp)
ATCCCCATTTTCTCGCCAAGGAACA
NONE
OsAffx.8858.1.S1_x_at--291--10371Chr01:14865727..14865751 (25 bp)
TTTTCTCGCCAAGGAACACGCAAGA
LOC_Os01g26250
OsAffx.8858.1.S1_x_at--986--1891Chr01:14865969..14865993 (25 bp)
ACGTCAGCGCCCACATAGGAGGAGC
NONE
OsAffx.8858.1.S1_x_at--686--1651Chr01:14865974..14865998 (25 bp)
AGCGCCCACATAGGAGGAGCTGGCT
NONE
OsAffx.8858.1.S1_x_at--930--3311Chr01:14865980..14866004 (25 bp)
CACATAGGAGGAGCTGGCTGCTCTG
NONE
OsAffx.8858.1.S1_x_at--70--1355Chr10:11700245..11700343 (25 bp)
AGAGAGTGCGAGGAACCGCCGCCCG
NONE
OsAffx.8858.1.S1_x_at--32--9634Chr10:11700305..11700325 (21 bp)
TCATGCCCAGCTAGCCAGCTGCTTC
NONE
OsAffx.8858.1.S1_x_at--755--10574Chr10:11700378..11700402 (25 bp)
TTCTCAAGTCGCAGTCGCAGCCGCT
NONE
Target Sequence 
GAGCAGACGGGAAGCGGGCAAGCACGTTGCGGAAGAGGAAGATGGCGCCGACGGGGAGCGGGATGGGGAGTGCGAGGACG
CCGCCGCCGTCGTCGTCCATGGCCGTAGATCTCGCGCCAGCGCCCTCAACGGTGTGGCCGGCGGGAGTGTGACGGCGACG
GGCGACGCTGTGGGGAGGAGGGCCGGCAGGCCGGTGCGCGTGGCCGAGGGCGGCGTCGTCACCGAGCTCGACCGGCCATC
CCCATTTTCTCGCCAAGGAACACGCAAGAGGGGCGGTCGCCGTTGTCGNNGNCGTGGTGATGACGGCGGCGGGCAACGTC
AGCGCCCACATAGGAGGAGCTGGCTGCTCTGGTGGCAGAGAGTGCGAGGAACCGCCGCCCGCGCGCCGCTCCTCCCCGCC
CACCCCACGCAGCTCCTTCCACCGCCGCCTATGCCCGCCGCTCATGCCCAGCTAGCCAGCTGCTTCCCCGCTGTCCGCCG
CCCGCACCGACCCCGCTTTGCCGCCGGCCGCCTCTCCCTTCTCAAGTCGCAGTCGCAGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8858.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis