Browse Element(s) Details


OsAffx.11213.1.S1_at

Description tigr:9629.m02552
TID=OsAffx.11213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2627011/11wall-associated kinase 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26224Os.45976.1.S1_x_at2/111+14843538..14852706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26240OsAffx.19542.3.S1_x_at6/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26240OsAffx.9949.1.S1_at1/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein
LOC_Os01g26259NANA1+14868841..14869235NA
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11213.1.S1_at--1101--10171Chr01:14876148..14876172 (25 bp)
TTGTGTGGATTCGAAAAACGGCCCA
LOC_Os01g26270
OsAffx.11213.1.S1_at--984--2391Chr01:14876161..14876185 (25 bp)
AAAAACGGCCCAGGGTATCTCTGCA
LOC_Os01g26270
OsAffx.11213.1.S1_at--233--1071Chr01:14876172..14876196 (25 bp)
AGGGTATCTCTGCAACTGCTCAGAA
LOC_Os01g26270
OsAffx.11213.1.S1_at--756--5151Chr01:14876183..14876207 (25 bp)
GCAACTGCTCAGAAGGGTATCAAGG
LOC_Os01g26270
OsAffx.11213.1.S1_at--249--5551Chr01:14876207..14876231 (25 bp)
GAAACCCTTACCTCCCTGATGGATG
LOC_Os01g26270
OsAffx.11213.1.S1_at--345--7991Chr01:14876227..14876251 (25 bp)
GGATGCACAGGCAAGTTTTCCTCTT
LOC_Os01g26270
OsAffx.11213.1.S1_at--581--2831Chr01:14876239..14876263 (25 bp)
AAGTTTTCCTCTTCACTCTGCAATT
LOC_Os01g26270
OsAffx.11213.1.S1_at--416--2011Chr01:14876253..14876277 (25 bp)
ACTCTGCAATTCCTTATCCTTATAT
LOC_Os01g26270
OsAffx.11213.1.S1_at--302--91Chr01:14876261..14876285 (25 bp)
ATTCCTTATCCTTATATCTTCAGTT
LOC_Os01g26270
OsAffx.11213.1.S1_at--397--2371Chr01:14876338..14876362 (25 bp)
AAACCATCATTTCCAATGAGCAAGG
LOC_Os01g26270
OsAffx.11213.1.S1_at--304--5151Chr01:14876369..14876393 (25 bp)
GCAACAAAAGGGACGATACATCATA
LOC_Os01g26270
Target Sequence 
TTGTGTGGATTCGAAAAACGGCCCAGGGTATCTCTGCAACTGCTCAGAAGGGTATCAAGGAAACCCTTACCTCCCTGATG
GATGCACAGGCAAGTTTTCCTCTTCACTCTGCAATTCCTTATCCTTATATCTTCAGTTCAACGAGATCTTGAATGATGTA
CTTAGTGATTATCTTAAAGGTGTAAATTTAAAACCATCATTTCCAATGAGCAAGGTGATATGCAACAAAAGGGACGATAC
ATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis