Browse Element(s) Details


Os.7017.1.S1_at

Description gb:CF310699
DB_XREF= gi:33682460
DB_XREF=ABF--05-H24.g1
CLONE=ABF--05-H24
TID=Os.7017.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.7017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative wall-associated kinase 2 (P0503E05.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2628011/11wall-associated kinase 3, putative, expressed
LOC_Os01g267802/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26240OsAffx.19542.3.S1_x_at6/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26240OsAffx.9949.1.S1_at1/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein
LOC_Os01g26259NANA1+14868841..14869235NA
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7017.1.S1_at--112--1111Chr01:14881160..14881184 (25 bp)
AGTGGGCTTGCAGACATAGCTAAGA
LOC_Os01g26280
Os.7017.1.S1_at--87--6171Chr01:14881235..14881259 (25 bp)
GAGGAGCTTAGCAGACTACGAAAAT
LOC_Os01g26280
Os.7017.1.S1_at--135--10871Chr01:14881273..14881297 (25 bp)
TTGGATACAACGTGATACTGAGATA
LOC_Os01g26280
Os.7017.1.S1_at--344--1092Chr01:15089993..15090017 (25 bp)
AGTGGACCATCAACTAGTAACCTAG
LOC_Os01g26780
Os.7017.1.S1_at--1146--1152Chr01:15090008..15090032 (25 bp)
AGTAACCTAGAAACTGAGCACAGCT
LOC_Os01g26780
Os.7017.1.S1_at--1088--5931Chr01:14881385..14881409 (25 bp)
GAGCACAACACCGAGTATAGAAGGA
LOC_Os01g26280
Os.7017.1.S1_at--471--10811Chr01:14881478..14881502 (25 bp)
TTGTACTCAAGCATTTCCACTTTCG
LOC_Os01g26280
Os.7017.1.S1_at--199--3311Chr01:14881495..14881519 (25 bp)
CACTTTCGTCCTTAACCTTATTCTG
LOC_Os01g26280
Os.7017.1.S1_at--740--10472Chr01:14881506..14881530 (25 bp)
TTAACCTTATTCTGTCCAGTTCGCT
LOC_Os01g26280
Os.7017.1.S1_at--594--4351Chr01:14881521..14881545 (25 bp)
CCAGTTCGCTGGTGATGTTTTATAT
LOC_Os01g26280
Os.7017.1.S1_at--657--5232Chr01:15090238..15090262 (25 bp)
GAATAACTTCTGTTTGGTTGCATAA
NONE
Target Sequence 
AGTGGGCTTGCAGACATAGCTAAGAAATGCTTAGACATGTGCAGTGACAATAGGCCATCAATGAAAGAGGTATCTGAGGA
GCTTAGCAGACTACGAAAATTTTCAAAACACCCNTTGGATACAACGTGATACTGAGATAGAGAGCTTTCTCAGTGGACCA
TCAACTAGTAACCTAGAAACTGAGCACAGCTATCTCAGTGGACCATCAACCAGTAACTTTGAAATCGAGCACAACACCGA
GTATAGAAGGAAGGATGAAGAAATGCCCATAAACCCAAGCACTTCATACTTNATCCGGTGAAAACAAATTGTTACAAGAT
TGTACTCAAGCATTTCCACTTTCGTCCTTAACCTTATTCTGTCCAGTTCGCTGGTGATGTTTTATATTGCAATTAGGAAT
AACTTCTGTTTGGTTGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis