Browse Element(s) Details


OsAffx.21092.2.S1_at

Description tigr:9629.m02556
TID=OsAffx.21092.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2631011/11expressed protein
LOC_Os01g267922/11wall-associated kinase-like 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21092.2.S1_at--733--3151Chr01:14897845..14897869 (25 bp)
AATTCTCTGGTGATTGTCGGATGCG
LOC_Os01g26310
OsAffx.21092.2.S1_at--80--612Chr01:15106114..15106138 (25 bp)
ATGCGGAATCGACGTCTACTTGTTC
LOC_Os01g26792
OsAffx.21092.2.S1_at--999--6111Chr01:14897765..14897789 (25 bp)
GAGTGAGTGCACCAACATGGCGCTC
LOC_Os01g26310
OsAffx.21092.2.S1_at--30--6111Chr01:14897673..14897697 (25 bp)
GAGTCCGTGCCTTTCGGTTTAATAT
LOC_Os01g26310
OsAffx.21092.2.S1_at--23--2471Chr01:14897633..14897657 (25 bp)
AACACATTCGGTTGCACTTGGTAAT
LOC_Os01g26310
OsAffx.21092.2.S1_at--783--5631Chr01:14897584..14897608 (25 bp)
GACAGCCAGTTCTACTTCAATACGG
LOC_Os01g26310
OsAffx.21092.2.S1_at--978--3091Chr01:14897566..14897590 (25 bp)
AATACGGCAGATCTCCTGTCAGAGA
LOC_Os01g26310
OsAffx.21092.2.S1_at--45--7791Chr01:14897521..14897545 (25 bp)
GGTGCTACATCGTTATTCTTTTCAG
LOC_Os01g26310
OsAffx.21092.2.S1_at--305--9711Chr01:14897483..14897507 (25 bp)
TCAACTCAATTGCTCAACTGCTCAG
LOC_Os01g26310
OsAffx.21092.2.S1_at--557--5652Chr01:15105727..15105751 (25 bp)
GACAGATTATGCCTGCAGCGACGGT
LOC_Os01g26792
OsAffx.21092.2.S1_at--42--3811Chr01:14897375..14897399 (25 bp)
CTGCCCTGCTGATAGTTTCGATTAT
LOC_Os01g26310
Target Sequence 
AATTCTCTGGTGATTGTCGGATGCGGAATCGACGTCTACTTGTTCCGCAGTCATACCAATATATTACAGGGGTATTGCAG
GAGTGAGTGCACCAACATGGCGCTCATGGACAAAAAGTTATCAGGACGACCATGCAATGGCATCGGTTGCTGCACCATCG
ACTTGCCAGGTGGAGTCCGTGCCTTTCGGTTTAATATCACTCAGAGGGAAGAAACACATTCGGTTGCACTTGGTAATTCT
ACAATTAAGGCCTTCTTAAGTGACAGCCAGTTCTACTTCAATACGGCAGATCTCCTGTCAGAGAAGATAAACGCAAACAC
CATCGGTGCTACATCGTTATTCTTTTCAGTTGCTATTACAGATCAACTCAATTGCTCAACTGCTCAGTTGGGTTTGAATA
AGACAGATTATGCCTGCAGCGACGGTAGCACATGCGTTGATCAGAGAAACCAGCGCGGCTATTCTTGTACCTGCCCTGCT
GATAGTTTCGATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21092.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis