Browse Element(s) Details


OsAffx.2092.1.S1_at

Description tigr:9629.m02554
TID=OsAffx.2092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2629010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26240OsAffx.19542.3.S1_x_at6/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26240OsAffx.9949.1.S1_at1/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein
LOC_Os01g26259NANA1+14868841..14869235NA
LOC_Os01g26270OsAffx.11213.1.S1_at11/111+14875357..14876424wall-associated kinase 3, putative
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2092.1.S1_at--698--6352Chr01:15091713..15091810 (25 bp)
GATCCCAAGGGATACTGTTTTTTGT
NONE
OsAffx.2092.1.S1_at--163--6492Chr01:15091796..15091820 (25 bp)
GATACTGTTTTTTGTTTGATAATGC
NONE
OsAffx.2092.1.S1_at--204--332Chr01:15091814..15091838 (25 bp)
ATAATGCATATGTCAGCACGATATA
NONE
OsAffx.2092.1.S1_at--108--6672Chr01:15091843..15091867 (25 bp)
GTTGAATTCGTTAGAACTGTTCATG
NONE
OsAffx.2092.1.S1_at--778--1432Chr01:15091855..15091874 (20 bp)
AGAACTGTTCATGGAAGGTAGGGAT
NONE
OsAffx.2092.1.S1_at--455--2351NONE
AAAGCAGAATAGATACCAGTATGGT
NONE
OsAffx.2092.1.S1_at--506--312Chr01:14885568..14885592 (25 bp)
ATACCAGTATGGTGTCCTGGGACTG
LOC_Os01g26290
OsAffx.2092.1.S1_at--897--5632Chr01:15093533..15093557 (25 bp)
GACTGGTACCGGCATCTTGGTTCTG
NONE
OsAffx.2092.1.S1_at--252--4272Chr01:15093541..15093565 (25 bp)
CCGGCATCTTGGTTCTGTAGGAGTT
NONE
OsAffx.2092.1.S1_at--1131--10051Chr01:14885613..14885637 (25 bp)
TAGGAGTTGGTTGGGACCGATTTCT
LOC_Os01g26290
OsAffx.2092.1.S1_at--139--6631Chr01:14885622..14885646 (25 bp)
GTTGGGACCGATTTCTACGACGCAC
LOC_Os01g26290
Target Sequence 
GATCCCAAGGGATACTGTTTTTTGTTTGATAATGCATATGTCAGCACGATATATTTTGTTGAATTCGTTAGAACTGTTCA
TGGAAGGTAGGGATGGTGGTGGTGGAGCAGGGGGGAGGGACAGTTTCTCAGCGAACTCTGCAAGCACAAGTTCAGCCAAG
AAAAGCAGAATAGATACCAGTATGGTGTCCTGGGACTGGTACCGGCATCTTGGTTCTGTAGGAGTTGGTTGGGACCGATT
TCTACGACGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis