Browse Element(s) Details


OsAffx.11215.1.S1_at

Description gb:NM_194036.1
DB_XREF= gi:34915155
GEN=P0503E05.29
TID=OsAffx.11215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503E05.29 (P0503E05.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2632011/11hypothetical protein
LOC_Os01g2680411/11ZmEBE-1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11215.1.S1_at--1150--2052Chr01:15127145..15127285 (25 bp)
ACTTCCTGGACGAGAGATGGCTATG
LOC_Os01g26804
OsAffx.11215.1.S1_at--949--5772Chr01:15127272..15127293 (22 bp)
GACGAGAGATGGCTATGCGACCACT
LOC_Os01g26804
OsAffx.11215.1.S1_at--728--1352Chr01:15127273..15127297 (25 bp)
AGAGATGGCTATGCGACCACTGGGT
LOC_Os01g26804
OsAffx.11215.1.S1_at--82--872Chr01:15127277..15127301 (25 bp)
ATGGCTATGCGACCACTGGGTGCTA
LOC_Os01g26804
OsAffx.11215.1.S1_at--824--4852Chr01:15127280..15127304 (25 bp)
GCTATGCGACCACTGGGTGCTACAA
LOC_Os01g26804
OsAffx.11215.1.S1_at--56--10152Chr01:15127282..15127306 (25 bp)
TATGCGACCACTGGGTGCTACAATA
LOC_Os01g26804
OsAffx.11215.1.S1_at--908--1952Chr01:15127291..15127315 (25 bp)
ACTGGGTGCTACAATATGGACTGCC
LOC_Os01g26804
OsAffx.11215.1.S1_at--190--7312Chr01:15127296..15127320 (25 bp)
GTGCTACAATATGGACTGCCCAGGT
LOC_Os01g26804
OsAffx.11215.1.S1_at--736--4832Chr01:15127298..15127322 (25 bp)
GCTACAATATGGACTGCCCAGGTTT
LOC_Os01g26804
OsAffx.11215.1.S1_at--943--272Chr01:15127304..15127328 (25 bp)
ATATGGACTGCCCAGGTTTTGAACG
LOC_Os01g26804
OsAffx.11215.1.S1_at--1136--8112Chr01:15127308..15127332 (25 bp)
GGACTGCCCAGGTTTTGAACGAGCA
LOC_Os01g26804
Target Sequence 
ACTTCCTGGACGAGAGATGGCTATGCGACCACTGGGTGCTACAATATGGACTGCCCAGGTTTTGAACGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis