Browse Element(s) Details


OsAffx.2093.1.S1_at

Description tigr:9629.m02559
TID=OsAffx.2093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant disease resistance response protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2634011/11Dirigent-like protein
LOC_Os01g268128/11hessian fly response gene 1 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein
LOC_Os01g26370Os.9007.1.S1_s_at11/111+14938206..14941824expressed protein
LOC_Os01g26370Os.27319.1.A1_at11/111+14938206..14941824expressed protein
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2093.1.S1_at--867--252Chr01:14924937..14924961 (25 bp)
ATATGCAGTTGTAATCCCACCAGAT
LOC_Os01g26340
OsAffx.2093.1.S1_at--1003--3392Chr01:14924957..14924981 (25 bp)
CAGATAGCCCTAACGGTTTTGGTGG
LOC_Os01g26340
OsAffx.2093.1.S1_at--165--6612Chr01:15145749..15145773 (25 bp)
GATTGGATGCCAGCCGTAGTAATAC
LOC_Os01g26812
OsAffx.2093.1.S1_at--684--6932Chr01:15145764..15145788 (25 bp)
GTAGTAATACTGTTGGTCGTGGTCA
LOC_Os01g26812
OsAffx.2093.1.S1_at--233--6152Chr01:15146089..15146112 (24 bp)
GAGGTTCAATGGTTCAACGCTTCAG
LOC_Os01g26812
OsAffx.2093.1.S1_at--902--6712Chr01:14925383..14925407 (25 bp)
GTTCTTCCGCAATCTGCTAATGGTG
LOC_Os01g26340
OsAffx.2093.1.S1_at--110--5471Chr01:14925426..14925450 (25 bp)
GAACTGGAGAACTTGCTTTGGCACG
LOC_Os01g26340
OsAffx.2093.1.S1_at--906--8972Chr01:15146233..15146257 (25 bp)
TGAACTTACACTCCATGCATACTAC
LOC_Os01g26812
OsAffx.2093.1.S1_at--1123--2012Chr01:15146253..15146277 (25 bp)
ACTACAGCCCAATGGATTCATGCGG
LOC_Os01g26812
OsAffx.2093.1.S1_at--73--7053Chr06:1551961..1552139 (25 bp)
TTTAGTACCCTGTCGAACAACCGCG
NONE
OsAffx.2093.1.S1_at--1051--17911Chr08:22949411..22949435 (25 bp)
ACCGCGGTTCGACAGGGATACCTAT
NONE
Target Sequence 
ATATGCAGTTGTAATCCCACCAGATAGCCCTAACGGTTTTGGTGGGACTGCTGCGAATGATTGGGTCATAACTGATGGAT
TGGATGCCAGCCGTAGTAATACTGTTGGTCGTGGTCAAGGATTTACTATCAATAATAGTTTGTCCAAGTTTAGCTTTTAC
ACATCATTTAACTTGGTTTTCGAGAATGGGAGGTTCAATGGTTCAACGCTTCAGATTACCGGGGTTCTTCCGCAATCTGC
TAATGGTGAGTGGAGCATTACAGGAGGAACTGGAGAACTTGCTTTGGCACGAGGCATTGCCAAATTTAAAGCTGTCCAGA
TGTCTAGTTTATCAAATGTGTATGAACTTACACTCCATGCATACTACAGCCCAATGGATTCATGCGGGCAATATGATTTT
AATGGAAAATCGCAAAACTATATGTCAGTTAGGCGAAATCGCAAGTTTAGTACCCTGTCGAACAACCGCGGTTCGACAGG
GATACCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis