Browse Element(s) Details


Os.36236.2.S1_x_at

Description gb:NM_194045.1
DB_XREF= gi:34915173
GEN=P0697D09.26
TID=Os.36236.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36236 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) receptor kinase-like protein (P0697D09.26), mRNA.
PROD=receptor kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2639011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein
LOC_Os01g26370Os.9007.1.S1_s_at11/111+14938206..14941824expressed protein
LOC_Os01g26370Os.27319.1.A1_at11/111+14938206..14941824expressed protein
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26400NANA1+14965691..14967340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26410OsAffx.21088.2.S1_s_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.2.S1_x_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.1.S1_at8/111+14970054..14970850hypothetical protein
LOC_Os01g26720OsAffx.32056.1.S1_x_at5/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26720OsAffx.32056.1.S1_at3/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36236.2.S1_x_at--43--1691Chr01:14949485..14949509 (25 bp)
AGCCAGCAACATTCTTTTGGACCAG
LOC_Os01g26390
Os.36236.2.S1_x_at--1056--4451Chr01:14949732..14949756 (25 bp)
GCCTCTGAAGGTATCTACTCGATCA
LOC_Os01g26390
Os.36236.2.S1_x_at--152--10851Chr01:14949775..14949799 (25 bp)
TTGGTGTTCTTCTTCTTGAGATACT
LOC_Os01g26390
Os.36236.2.S1_x_at--1107--8191Chr01:14949811..14949835 (25 bp)
GGAATTCTGGTTTCCACCAATACGG
LOC_Os01g26390
Os.36236.2.S1_x_at--637--6051Chr01:14949835..14949859 (25 bp)
GAGATTTTCTTAACCTCCTAGGCTA
LOC_Os01g26390
Os.36236.2.S1_x_at--311--2631Chr01:14949846..14949982 (25 bp)
AACCTCCTAGGCTATGCATGGCATA
LOC_Os01g26390
Os.36236.2.S1_x_at--512--10091Chr01:14950013..14950037 (25 bp)
TAGGAGCGTCAATTCCTCAGACGAT
LOC_Os01g26390
Os.36236.2.S1_x_at--727--9691Chr01:14950064..14950088 (25 bp)
TCAACATTGCGCTTATGTGCGTGCA
LOC_Os01g26390
Os.36236.2.S1_x_at--479--5851Chr01:14950110..14950134 (25 bp)
GACCATGTCAGATGTCGTAGCGATG
LOC_Os01g26390
Os.36236.2.S1_x_at--1008--1631Chr01:14950141..14950165 (25 bp)
AGCGAGAGTGCGGTTCTTCCTGAAC
LOC_Os01g26390
Os.36236.2.S1_x_at--771--9751Chr01:14950167..14950191 (25 bp)
TAAGCACCCGGCATACTACAACCTA
LOC_Os01g26390
Target Sequence 
AGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATA
ATACCGAAGGAAACACAAAGAGGGTGGTGGGAACAAGTGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCG
ATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATA
CGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAA
TTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGAT
CGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTA
CAACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36236.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis