Browse Element(s) Details


OsAffx.21088.1.S1_at

Description gb:NM_194050.1
DB_XREF= gi:34915183
GEN=P0697D09.31
TID=OsAffx.21088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0697D09.31 (P0697D09.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g264108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26400NANA1+14965691..14967340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26410OsAffx.21088.2.S1_s_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.2.S1_x_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.1.S1_at8/111+14970054..14970850hypothetical protein
LOC_Os01g26720OsAffx.32056.1.S1_x_at5/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26720OsAffx.32056.1.S1_at3/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26724NANA1+14981077..14982977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26728NANA1+14986565..14987993hypothetical protein
LOC_Os01g26732NANA1+14994211..14997865transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21088.1.S1_at--843--2611Chr01:14968186..14968210 (25 bp)
AACCCTCTTCGGGAGAGTGCCACGT
NONE
OsAffx.21088.1.S1_at--960--3651Chr01:14969986..14970010 (25 bp)
CTTCATCGCGCTGGGACAGGGCAAC
NONE
OsAffx.21088.1.S1_at--449--9271Chr01:14969991..14970015 (25 bp)
TCGCGCTGGGACAGGGCAACCTCCG
NONE
OsAffx.21088.1.S1_at--462--8191Chr01:14970327..14970348 (22 bp)
GGAAGATTTTGGCTACTCCGTCGGC
LOC_Os01g26410
OsAffx.21088.1.S1_at--634--1092Chr01:14970473..14970497 (25 bp)
AGTGGCGCAGGGACGAAGCAGCTTC
LOC_Os01g26410
OsAffx.21088.1.S1_at--583--4111Chr01:14970486..14970510 (25 bp)
CGAAGCAGCTTCGAGCGGAGACATA
LOC_Os01g26410
OsAffx.21088.1.S1_at--450--10631Chr01:14970495..14970519 (25 bp)
TTCGAGCGGAGACATAGAGCTTGCC
LOC_Os01g26410
OsAffx.21088.1.S1_at--500--1371Chr01:14970510..14970534 (25 bp)
AGAGCTTGCCGAAGATACATGCACG
LOC_Os01g26410
OsAffx.21088.1.S1_at--902--1791Chr01:14970557..14970581 (25 bp)
ACCGCAAGCTTGGTGCACCCATAAG
LOC_Os01g26410
OsAffx.21088.1.S1_at--341--10851Chr01:14970566..14970590 (25 bp)
TTGGTGCACCCATAAGCGAGCTCGA
LOC_Os01g26410
OsAffx.21088.1.S1_at--949--7331Chr01:14970569..14970593 (25 bp)
GTGCACCCATAAGCGAGCTCGAGCT
LOC_Os01g26410
Target Sequence 
AACCCTCTTCGGGAGAGTGCCACGTGGGGGAGCACTTCATCGCGCTGGGACAGGGCAACCTCCGCCTCCCGCTTCATCAC
ACCAAAGTCATCTCCTCCCACAATGGCTACTCCAAGCAGCCCACGTCCGATGTCCAATGCCCAGCCCAATTATTCAAAAC
AGTCGGAGGTGGGGCGGAGGAAGATTTTGGCTACTCCGTCGGCAGTGCGGGCGGCGTGCTCCGACAAAGGGAGTGGCGCA
GGGACGAAGCAGCTTCGAGCGGAGACATAGAGCTTGCCGAAGATACATGCACGGGGAGGCTCGAGCGCCACGACCACCGC
AAGCTTGGTGCACCCATAAGCGAGCTCGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis