Browse Element(s) Details


OsAffx.21088.2.S1_x_at

Description tigr:9629.m02566
TID=OsAffx.21088.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2641011/11hypothetical protein
LOC_Os01g268241/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26400NANA1+14965691..14967340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26410OsAffx.21088.2.S1_s_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.2.S1_x_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.1.S1_at8/111+14970054..14970850hypothetical protein
LOC_Os01g26720OsAffx.32056.1.S1_x_at5/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26720OsAffx.32056.1.S1_at3/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26724NANA1+14981077..14982977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26728NANA1+14986565..14987993hypothetical protein
LOC_Os01g26732NANA1+14994211..14997865transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21088.2.S1_x_at--495--3011Chr01:14970087..14970111 (25 bp)
AATGCCCAGCCCAATTATTCAAAAC
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--976--7111Chr01:14970620..14970644 (25 bp)
GTCATGGGCGGCGTTTTTGTCTACA
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--113--3511Chr01:14970622..14970646 (25 bp)
CATGGGCGGCGTTTTTGTCTACAGC
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--917--7571Chr01:14970625..14970649 (25 bp)
GGGCGGCGTTTTTGTCTACAGCGAC
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--902--8311Chr01:14970626..14970650 (25 bp)
GGCGGCGTTTTTGTCTACAGCGACT
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--1024--4691Chr01:14970627..14970651 (25 bp)
GCGGCGTTTTTGTCTACAGCGACTC
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--1025--3911Chr01:14970628..14970652 (25 bp)
CGGCGTTTTTGTCTACAGCGACTCG
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--800--8371Chr01:14970629..14970653 (25 bp)
GGCGTTTTTGTCTACAGCGACTCGT
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--788--6811Chr01:14970632..14970656 (25 bp)
GTTTTTGTCTACAGCGACTCGTGCG
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--634--10251Chr01:14970635..14970659 (25 bp)
TTTGTCTACAGCGACTCGTGCGGCG
LOC_Os01g26410
OsAffx.21088.2.S1_x_at--1089--8172Chr01:15166148..15166172 (25 bp)
GGAACCTCATCGTTGACTATGGCTC
LOC_Os01g26824
Target Sequence 
AATGCCCAGCCCAATTATTCAAAACAGTCGGAGGTGGGGCGGAGGAAGGTGGAGGTCATGGGCGGCGTTTTTGTCTACAG
CGACTCGTGCGGCGGCAACATCGCGCGGAACCTCATCGTTGACTATGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21088.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis