Browse Element(s) Details


OsAffx.21088.2.S1_s_at

Description tigr:9629.m02566
TID=OsAffx.21088.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2641011/11hypothetical protein
LOC_Os01g268243/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26400NANA1+14965691..14967340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26410OsAffx.21088.2.S1_s_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.2.S1_x_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.1.S1_at8/111+14970054..14970850hypothetical protein
LOC_Os01g26720OsAffx.32056.1.S1_x_at5/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26720OsAffx.32056.1.S1_at3/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26724NANA1+14981077..14982977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26728NANA1+14986565..14987993hypothetical protein
LOC_Os01g26732NANA1+14994211..14997865transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21088.2.S1_s_at--556--3191Chr01:14970086..14970110 (25 bp)
CAATGCCCAGCCCAATTATTCAAAA
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--496--3011Chr01:14970087..14970111 (25 bp)
AATGCCCAGCCCAATTATTCAAAAC
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--836--4531Chr01:14970090..14970114 (25 bp)
GCCCAGCCCAATTATTCAAAACAGT
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--327--3351Chr01:14970093..14970117 (25 bp)
CAGCCCAATTATTCAAAACAGTCGG
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--1077--4531Chr01:14970095..14970119 (25 bp)
GCCCAATTATTCAAAACAGTCGGAG
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--573--151Chr01:14970100..14970124 (25 bp)
ATTATTCAAAACAGTCGGAGGTGGG
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--960--2491Chr01:14970662..14970686 (25 bp)
AACATCGCGCGGAACCTCATCGTTG
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--991--9031Chr01:14970722..14970746 (25 bp)
TGCATCCACTTCTGTGTCCCCGGCA
LOC_Os01g26410
OsAffx.21088.2.S1_s_at--635--8732Chr01:15166252..15166276 (25 bp)
TGTCACTCCGGTCCAATCAACACTT
LOC_Os01g26824
OsAffx.21088.2.S1_s_at--1016--7092Chr01:15166253..15166277 (25 bp)
GTCACTCCGGTCCAATCAACACTTG
LOC_Os01g26824
OsAffx.21088.2.S1_s_at--608--7772Chr01:14970782..14970806 (25 bp)
GGTCCAATCAACACTTGCTCCGCCG
LOC_Os01g26410
Target Sequence 
CAATGCCCAGCCCAATTATTCAAAACAGTCGGAGGTGGGGCGGAGGAAGGTGGAGGTCATGGGCGGCGTTTTTGTCTACA
GCGACTCGTGCGGCGGCAACATCGCGCGGAACCTCATCGTTGACTATGGCTCCGGCAAGATCGCACTCACCGCCGCCTGC
ATCCACTTCTGTGTCCCCGGCACCGCCCTCAACCTCTCCTTCCGCCGCTGTCACTCCGGTCCAATCAACACTTGCTCCGC
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21088.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis