Browse Element(s) Details


Os.27319.1.A1_at

Description gb:AK067903.1
DB_XREF= gi:32977921
TID=Os.27319.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124N06, full insert sequence.
FL= gb:AK067903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2637011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein
LOC_Os01g26370Os.9007.1.S1_s_at11/111+14938206..14941824expressed protein
LOC_Os01g26370Os.27319.1.A1_at11/111+14938206..14941824expressed protein
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26400NANA1+14965691..14967340retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27319.1.A1_at--357--7332Chr01:14941252..14941276 (25 bp)
GTGAATGGCAGTTTATTTCCGAACA
LOC_Os01g26370
Os.27319.1.A1_at--1041--5971Chr01:14941277..14941301 (25 bp)
GAGAAATCATGTTTCCTCAGGTTAA
LOC_Os01g26370
Os.27319.1.A1_at--638--10171Chr01:14941349..14941373 (25 bp)
TATCACCAACTCTTCACACTGTTAA
LOC_Os01g26370
Os.27319.1.A1_at--283--2251Chr01:14941372..14941396 (25 bp)
AAATTCTTTGACTCCAATCATAGAT
LOC_Os01g26370
Os.27319.1.A1_at--372--251Chr01:14941400..14941424 (25 bp)
ATATCTGAACTGGATACTCTATGTA
LOC_Os01g26370
Os.27319.1.A1_at--243--3771Chr01:14941416..14941440 (25 bp)
CTCTATGTATTGTCTATTATTGTGC
LOC_Os01g26370
Os.27319.1.A1_at--260--171Chr01:14941431..14941455 (25 bp)
ATTATTGTGCATGTATTCCTCATAC
LOC_Os01g26370
Os.27319.1.A1_at--278--1211Chr01:14941460..14941484 (25 bp)
AGTTTTTATCATTTCACAATTCCTA
LOC_Os01g26370
Os.27319.1.A1_at--544--5212Chr01:14941494..14941518 (25 bp)
GAATTCCTACTATTCACCATATCAT
LOC_Os01g26370
Os.27319.1.A1_at--332--10492Chr01:14941529..14941553 (25 bp)
TTACACCATGTAATCCTTGCTATTG
LOC_Os01g26370
Os.27319.1.A1_at--623--6751Chr01:14941556..14941580 (25 bp)
GTTACTGAAGTACATGTCCTTTTGC
LOC_Os01g26370
Target Sequence 
GTGAATGGCAGTTTATTTCCGAACAGAGAAATCATGTTTCCTCAGGTTAAAAGAAAAAAAAAAGAGAACATGTTTCTGGA
AGTTCATTTTATTTGATTATCACCAACTCTTCACACTGTTAAATTCTTTGACTCCAATCATAGATATAATATCTGAACTG
GATACTCTATGTATTGTCTATTATTGTGCATGTATTCCTCATACTAAAAGTTTTTATCATTTCACAATTCCTATTATCTA
ATGAATTCCTACTATTCACCATATCATTTTTAAATTATTACACCATGTAATCCTTGCTATTGAAGTTACTGAAGTACATG
TCCTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27319.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis