Browse Element(s) Details


OsAffx.21096.2.S1_x_at

Description tigr:9629.m02546
TID=OsAffx.21096.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2621011/11Calcium binding EGF domain containing protein, expressed
LOC_Os02g421501/11Calcium binding EGF domain containing protein, expressed
LOC_Os02g421601/11Protein kinase domain containing protein
LOC_Os02g421901/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26190NANA1+14823636..14826747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26210OsAffx.21096.1.S1_at11/111+14838579..14840751Calcium binding EGF domain containing protein, expressed
LOC_Os01g26210OsAffx.21096.2.S1_x_at11/111+14838579..14840751Calcium binding EGF domain containing protein, expressed
LOC_Os01g26224Os.45976.1.S1_x_at2/111+14843538..14852706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26240OsAffx.19542.3.S1_x_at6/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26240OsAffx.9949.1.S1_at1/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21096.2.S1_x_at--44--7531Chr01:14839436..14839460 (25 bp)
GTGGAATCGCATCAGAATTGCCCTT
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--353--5211Chr01:14839422..14839446 (25 bp)
GAATTGCCCTTGAGGCTGCAAGCGC
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--1002--3691Chr01:14839391..14839415 (25 bp)
CTATCTCCATTGTGCTGCCTCGGTA
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--30--4791Chr01:14839378..14839402 (25 bp)
GCTGCCTCGGTACCAATATTTCATA
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--384--5591Chr01:14839346..14839370 (25 bp)
GAAATCTGCCAATATACTTCTCGAT
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--901--7774Chr02:25343142..25343190 (25 bp)
GGTGCTTCAAGATCTGTTTCTATTG
LOC_Os02g42150
OsAffx.21096.2.S1_x_at--101--10791Chr01:14839269..14839293 (25 bp)
TTGATGAAACTCACGTGGTCACAAT
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--884--871Chr01:14839129..14839153 (25 bp)
AGGCCAATCTTCCTCAATTCAATTG
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--1142--5431Chr01:14839094..14839118 (25 bp)
GAACCTGTGTCATCACTTTCTTCAA
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--130--6311Chr01:14838997..14839021 (25 bp)
GATGAGATTGCTTCGCTTGCAGAGA
LOC_Os01g26210
OsAffx.21096.2.S1_x_at--531--5891Chr01:14838925..14838949 (25 bp)
GAGCTAAGGCTGCAACTTCTGAGGA
LOC_Os01g26210
Target Sequence 
GTGGAATCGCATCAGAATTGCCCTTGAGGCTGCAAGCGCTCTTGCCTATCTCCATTGTGCTGCCTCGGTACCAATATTTC
ATAGAGATGTGAAATCTGCCAATATACTTCTCGATGATAATTTCACTACAAAGGTTTCAGATTTTGGTGCTTCAAGATCT
GTTTCTATTGATGAAACTCACGTGGTCACAATAGTGCAAGGTACATTTGGATACTTGGATCCTGAATATTATCATACAGG
ACAATTAAATGAGAAGAGTGACGTTTACAGTTTTGGTGTAATACTTATTGAGCTTATAACAAGGAAAAGGCCAATCTTCC
TCAATTCAATTGGAGAAAAGCAGAACCTGTGTCATCACTTTCTTCAAAGACAGCAAAACAATACCACATCAGAAATAGTA
GATGTACAGGTTTTGGAAGAAGCAGACCAGTGGGAAATTGATGAGATTGCTTCGCTTGCAGAGATATGCTTGAGGCTTAG
AGGAGAACAGAGACCAAAAATGAAAGAAGTGGAGCTAAGGCTGCAACTTCTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21096.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis