Browse Element(s) Details


Os.52184.1.S1_at

Description gb:AK065521.1
DB_XREF= gi:32975539
TID=Os.52184.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030G02, full insert sequence.
FL= gb:AK065521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0790010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07830NANA7+3929837..3932091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07840NANA7+3932362..3935160retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07850NANA7+3936309..3936518hypothetical protein
LOC_Os07g07860OsAffx.28337.1.S1_at9/117+3946445..3947647Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07870OsAffx.5247.1.S1_at11/117+3949100..3949881Protease inhibitor/seed storage/LTP family protein
LOC_Os07g07880Os.47739.1.S1_at11/117+3951283..3953194expressed protein
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52184.1.S1_at--367--1971Chr07:3956838..3956862 (25 bp)
ACTGATTCACCATTATTTGCCTTTC
LOC_Os07g07900
Os.52184.1.S1_at--896--1471Chr07:3956509..3956533 (25 bp)
AGCAATATTTGAGCAGTCTTTCCTG
LOC_Os07g07900
Os.52184.1.S1_at--626--2291Chr07:3956478..3956502 (25 bp)
AAATGTTCATGTTTCATCACCACAC
LOC_Os07g07900
Os.52184.1.S1_at--766--6831Chr07:3956468..3956492 (25 bp)
GTTTCATCACCACACATATGCAGCA
LOC_Os07g07900
Os.52184.1.S1_at--109--271Chr07:3956453..3956477 (25 bp)
ATATGCAGCATTACCCCACGGTCTG
LOC_Os07g07900
Os.52184.1.S1_at--360--1931Chr07:3956436..3956460 (25 bp)
ACGGTCTGCAGGTTGTCTCCATGCA
LOC_Os07g07900
Os.52184.1.S1_at--572--7151Chr07:3956422..3956446 (25 bp)
GTCTCCATGCATCTCACCAAAAATT
LOC_Os07g07900
Os.52184.1.S1_at--187--8031Chr07:3956381..3956405 (25 bp)
GGAGTACTTAGCCTACATCCTTGTA
LOC_Os07g07900
Os.52184.1.S1_at--824--9871Chr07:3956368..3956392 (25 bp)
TACATCCTTGTACCCATTTCCCAAT
LOC_Os07g07900
Os.52184.1.S1_at--166--3591Chr07:3956354..3956378 (25 bp)
CATTTCCCAATCTTGCCAGCTAAAA
LOC_Os07g07900
Os.52184.1.S1_at--234--1611Chr07:3956268..3956292 (25 bp)
AGCTGCAGCGCAGGGATCTGCACAA
NONE
Target Sequence 
ACTGATTCACCATTATTTGCCTTTCAGAGATGAGAAAGCCTTCTGCAGCAGCCAATGCCGCTACCACGAAGTGCATTTCG
ATAAAAGGATCGATGAAGCATCGGATGTGTCATTTAAACTGAAGAATTGATTGGATCTTTTCTTTTTTTTTTCAGCCTAA
ATTTTGGCCACTACCTGCTTATGAGTTATGAGTGAGATTATCATTCTTCTACCTAAATTCTTTTGGTTTGAATGGATGCA
TGTGTTGTATGGGTGAGAAAAAAAAACTAGCAGGGTTTGGAGAGCCCTATTTTTGCTGTATAATCAGAAGTTCAGAACTG
GTGATCATGAGCAATATTTGAGCAGTCTTTCCTGCTGCAAAAATGTTCATGTTTCATCACCACACATATGCAGCATTACC
CCACGGTCTGCAGGTTGTCTCCATGCATCTCACCAAAAATTCAGAACAGTGAGAAATGGAGTACTTAGCCTACATCCTTG
TACCCATTTCCCAATCTTGCCAGCTAAAATGGTGAGCACAAATGCAATATTTATATGTTGTAATCTTCAACTAGTTGGAA
ATTGGAGCAAAGCTGCAGCGCAGGGATCTGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis