Browse Element(s) Details


Os.49900.1.S1_at

Description gb:AK119312.1
DB_XREF= gi:37988935
TID=Os.49900.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G09, full insert sequence.
FL= gb:AK119312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g079101/11potassium channel AKT5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07860OsAffx.28337.1.S1_at9/117+3946445..3947647Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07870OsAffx.5247.1.S1_at11/117+3949100..3949881Protease inhibitor/seed storage/LTP family protein
LOC_Os07g07880Os.47739.1.S1_at11/117+3951283..3953194expressed protein
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07940OsAffx.5249.1.S1_at10/117+3986913..3988823hypothetical protein
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009860biological_processpollen tube growth
GO:0042391biological_processregulation of membrane potential
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49900.1.S1_at--739--8831NONE
TGATCGTCCTTGACGAGCCTACTAA
NONE
Os.49900.1.S1_at--667--2951Chr07:3971496..3971568 (25 bp)
AAGGCCATCAAGTCCTTCGAGGGTG
LOC_Os07g07910
Os.49900.1.S1_at--664--7751NONE
GGTGTTATCATCATCACTCACTCTG
NONE
Os.49900.1.S1_at--254--851NONE
ATGGACGGCAAGATGACTCCTTCCG
NONE
Os.49900.1.S1_at--327--10471NONE
TTACCTCCGCCAAGATGCGCAAGAA
NONE
Os.49900.1.S1_at--450--5711NONE
GACTAAACGTATCGCCCTTGCAAAA
NONE
Os.49900.1.S1_at--352--3691NONE
CTTTGTTCTTCATGACTGTTACGCA
NONE
Os.49900.1.S1_at--432--6771NONE
GTTACGCATGCATACCAGGCTTAGA
NONE
Os.49900.1.S1_at--1129--7111NONE
GTCATGGCTGGCGTTTGGATTCCAA
NONE
Os.49900.1.S1_at--950--6151NONE
GAGGTACTAGCTTTGACAGCCCGCG
NONE
Os.49900.1.S1_at--878--10691NONE
TTGCGGGTCGATCTCGTTGCAGATA
NONE
Target Sequence 
TGATCGTCCTTGACGAGCCTACTAACTACCTCGACCGTGACTCTCTCGGTGCCTTGTCCAAGGCCATCAAGTCCTTCGAG
GGTGGTGTTATCATCATCACTCACTCTGCCGAGTTCACCAAGGACTTGACTGAGGAAGTCTGGGCTGTCATGGACGGCAA
GATGACTCCTTCCGGCCACAACTGGGTCCAGGGTCAGGGTGCCGGTCCCCGTCTCACCGAGAAGGGTGACGAGGAGGAGA
AGTTTGACGCTATGGGCAATAAAATTGCGGCGACTGAAAAGAAGAAGAAGCTTACCTCCGCCAAGATGCGCAAGAAGAAG
AAGGACCGCATGGCCCGCCGCAAGCGTGGCGAGGAGGTCTTCTCCGACGAGGACGACTAAACGTATCGCCCTTGCAAAAG
TCTTTCTTTGTTCTTCATGACTGTTACGCATGCATACCAGGCTTAGAGTTTGCCTATGATAATGAGGGTAGCAGTGGTCA
TGGCTGGCGTTTGGATTCCAAAATTTGCGAGGTACTAGCTTTGACAGCCCGCGCATTTTGCGGGTCGATCTCGTTGCAGA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis