Browse Element(s) Details


OsAffx.5247.1.S1_at

Description tigr:9635.m00736
TID=OsAffx.5247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0787011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07830NANA7+3929837..3932091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07840NANA7+3932362..3935160retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07850NANA7+3936309..3936518hypothetical protein
LOC_Os07g07860OsAffx.28337.1.S1_at9/117+3946445..3947647Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07870OsAffx.5247.1.S1_at11/117+3949100..3949881Protease inhibitor/seed storage/LTP family protein
LOC_Os07g07880Os.47739.1.S1_at11/117+3951283..3953194expressed protein
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5247.1.S1_at--448--7391Chr07:3949163..3949187 (25 bp)
GTGATGACAATGCTTGCTTCCCGTG
LOC_Os07g07870
OsAffx.5247.1.S1_at--522--7291Chr07:3949185..3949209 (25 bp)
GTGCCGCATCGCAGAACAATGGCTG
LOC_Os07g07870
OsAffx.5247.1.S1_at--42--2231Chr07:3949200..3949224 (25 bp)
ACAATGGCTGCTCCAGCGTGATGAT
LOC_Os07g07870
OsAffx.5247.1.S1_at--102--7291Chr07:3949324..3949348 (25 bp)
GTGCCTCTGCATGGTCCTGGATGGC
LOC_Os07g07870
OsAffx.5247.1.S1_at--712--371Chr07:3949373..3949397 (25 bp)
ATCAACCACACGAGGGCGCTGGAGC
LOC_Os07g07870
OsAffx.5247.1.S1_at--114--8551Chr07:3949392..3949416 (25 bp)
TGGAGCTCCCTGGTGTCTGCAAGGT
LOC_Os07g07870
OsAffx.5247.1.S1_at--647--7171Chr07:3949406..3949430 (25 bp)
GTCTGCAAGGTCCAGGCACCACCAA
LOC_Os07g07870
OsAffx.5247.1.S1_at--411--3351Chr07:3949563..3949587 (25 bp)
CAGCACCAGATACACCTACATTAGC
LOC_Os07g07870
OsAffx.5247.1.S1_at--1160--2831Chr07:3949621..3949782 (25 bp)
AAGTCCACCACCTGCAGGAAGTGCA
LOC_Os07g07870
OsAffx.5247.1.S1_at--301--7971Chr07:3949783..3949807 (25 bp)
GGATCTAACAAAACCTCAAGCGCCA
LOC_Os07g07870
OsAffx.5247.1.S1_at--886--6071Chr07:3949827..3949851 (25 bp)
GAGTTTAATGGCCAGTGTGCTCATC
LOC_Os07g07870
Target Sequence 
GTGATGACAATGCTTGCTTCCCGTGCCGCATCGCAGAACAATGGCTGCTCCAGCGTGATGATGACGCTCTCCCCGTGCCT
GGATTACATCTCCGGCAAATCGCCGATCCCCGAGTTCACCTGCTGCACCACGCTCGCTGGCGTCGTCCAGTCCGACCCCC
GGTGCCTCTGCATGGTCCTGGATGGCAGCGCGGCGTCCTTCGGCATCTCCATCAACCACACGAGGGCGCTGGAGCTCCCT
GGTGTCTGCAAGGTCCAGGCACCACCAATCAGCCAATGCACAGCCGTCCCAACTCCACCTCCAGCACCAGATACACCTAC
ATTAGCTGATGAGCCAGCAGAGACAAACGAGGATGAACCAAGTCCACCACCTGCAGGAAGTGCAGGATCTAACAAAACCT
CAAGCGCCACAAACTCAAAGAAAGCAGCGAGTTTAATGGCCAGTGTGCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis