Browse Element(s) Details


Os.47739.1.S1_at

Description gb:AK064387.1
DB_XREF= gi:32974405
TID=Os.47739.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E11, full insert sequence.
FL= gb:AK064387.1 gb:AK102660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0788011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07830NANA7+3929837..3932091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07840NANA7+3932362..3935160retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07850NANA7+3936309..3936518hypothetical protein
LOC_Os07g07860OsAffx.28337.1.S1_at9/117+3946445..3947647Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07870OsAffx.5247.1.S1_at11/117+3949100..3949881Protease inhibitor/seed storage/LTP family protein
LOC_Os07g07880Os.47739.1.S1_at11/117+3951283..3953194expressed protein
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47739.1.S1_at--590--5291Chr07:3951816..3951840 (25 bp)
GAAGTGCGAGCAAGTGGATCCTAAT
LOC_Os07g07880
Os.47739.1.S1_at--702--5391Chr07:3951746..3951770 (25 bp)
GAAGCTTCCCATTGAACTTAGCTAA
LOC_Os07g07880
Os.47739.1.S1_at--538--3851Chr07:3951720..3951744 (25 bp)
CTGACTGGCAGTACTCTGGAGTTGC
LOC_Os07g07880
Os.47739.1.S1_at--77--5311Chr07:3951693..3951717 (25 bp)
GAAGGCATCTCTGTTCTTATGTTTT
LOC_Os07g07880
Os.47739.1.S1_at--385--10591Chr07:3951669..3951693 (25 bp)
TTCTCCTCAGTTGTCCTTGTTGTAA
LOC_Os07g07880
Os.47739.1.S1_at--656--9231Chr07:3951656..3951680 (25 bp)
TCCTTGTTGTAATCAGACCTGCTGG
LOC_Os07g07880
Os.47739.1.S1_at--487--9131Chr07:3951637..3951661 (25 bp)
TGCTGGTCTCCATTCGGTAAAGATT
LOC_Os07g07880
Os.47739.1.S1_at--445--8051Chr07:3951575..3951599 (25 bp)
GGAGCAAACTATCTCTTCCTTGAGT
LOC_Os07g07880
Os.47739.1.S1_at--994--6311Chr07:3951521..3951545 (25 bp)
GATGACAATCTCCATCATTTTGAGG
LOC_Os07g07880
Os.47739.1.S1_at--809--5471Chr07:3951317..3951341 (25 bp)
GAACTAGTCTTGGATGTACATCATC
LOC_Os07g07880
Os.47739.1.S1_at--283--7031Chr07:3951302..3951326 (25 bp)
GTACATCATCTCATTTTCATTTTAT
LOC_Os07g07880
Target Sequence 
GAAGTGCGAGCAAGTGGATCCTAATGGCAAGATAATGAGAGATGTCATTACAGGATATCTTCAAATCTAAGAAGCTTCCC
ATTGAACTTAGCTAAGCTGACTGGCAGTACTCTGGAGTTGCAAGAAGGCATCTCTGTTCTTATGTTTTTCTCCTCAGTTG
TCCTTGTTGTAATCAGACCTGCTGGTCTCCATTCGGTAAAGATTAGCAATGAAATAATTCAGTTAGGAATTAGCTAGCTC
AGGAGCAAACTATCTCTTCCTTGAGTTAAGGAAAAANTGTTAATGTGTTCATGGTGATGACAATCTCCATCATTTTGAGG
TACAAGATATATCAGTGGTCAATTGCTTTGAATGAAGGAAATCGCCTTTAAGGAGAGTAGCTATTCAACTTTGTTTTATA
AATGTTTAGATTTGCATAATATAGTAAAACTCATGCTCGCATGTTATTAAAGCATATCCAAGAAAAATAGTAACCTATAT
ATGACATGTTGAGTTGAGTGAACTAGTCTTGGATGTACATCATCTCATTTTCATTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis