Browse Element(s) Details


Os.19069.1.S2_x_at

Description gb:AK101982.1
DB_XREF= gi:32987191
TID=Os.19069.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033078B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033078B17, full insert sequence.
FL= gb:AK062865.1 gb:AK101982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g079741/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07990Os.8859.1.S1_s_at11/117+4027661..4029140Leucine Rich Repeat family protein, expressed
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19069.1.S2_x_at--125--9311Chr11:25118530..25118554 (25 bp)
TCCCCATTGGAACTGGCCTTCATTG
NONE
Os.19069.1.S2_x_at--370--51Chr11:25118509..25118533 (25 bp)
ATTGTCACTTCATCGTCTCCATGTC
NONE
Os.19069.1.S2_x_at--435--771Chr11:25118489..25118513 (25 bp)
ATGTCGGAGCTTGTCATCATGATCA
NONE
Os.19069.1.S2_x_at--1146--411Chr11:25118361..25118385 (25 bp)
ATCATCATCAACCACATTTCCAAAT
NONE
Os.19069.1.S2_x_at--400--3811Chr11:25118267..25118291 (25 bp)
CTCCGAGATCCACTTCATTGAGAAG
NONE
Os.19069.1.S2_x_at--487--9795Chr10:5482099..5482122 (24 bp)
TAAGAATTGGCACACTTTGACGACA
NONE
Os.19069.1.S2_x_at--1041--10573Chr11:22521933..22521958 (25 bp)
TTCTCATGTTTAGTTACACTCCAAA
NONE
Os.19069.1.S2_x_at--585--6771Chr11:25118139..25118163 (25 bp)
GTTACACTCCAAATGCAATATTATT
NONE
Os.19069.1.S2_x_at--82--7673Chr11:22520399..22520423 (25 bp)
GGGTAGTTTAGTATTTTCGCATCTC
NONE
Os.19069.1.S2_x_at--1127--10293Chr11:22520413..22520443 (25 bp)
TTTCGCATCTCTTTTGTACATATTT
NONE
Os.19069.1.S2_x_at--37--2092Chr11:25119752..25119776 (25 bp)
ACATATTTATATTTCCCCTTCAGGG
NONE
Target Sequence 
TCCCCATTGGAACTGGCCTTCATTGTCACTTCATCGTCTCCATGTCGGAGCTTGTCATCATGATCATCATCAATCAGCGA
AGGTCCGAAGAACAGTTTGTGAAGGGCCTTCATCAACATCATCATCAGTCAAAGGACCGAAGAACAGTTTGTGAAGTTCC
ATTGTCATCATCATCATCAACCACATTTCCAAATCAATAAAGAGCCGAAGAACGGTTCGTGAAGGCTTCAAGGTACCAAG
GGCCGAAGAACAGTTTGTGAAGGCTCCGAGATCCACTTCATTGAGAAGGGGATATATCTTTTCTTCATCATCATCTAAGA
ATTGGCACACTTTGACGACATCATCAAGACTTTAAAGATAGGCTAATATTTAGTTTGTGTTCTCATGTTTAGTTACACTC
CAAATGCAATATTATTGTATACACATTGCATTTGAGTGGGGGTGTTAAGATATTAGGGGTAGTTTAGTATTTTCGCATCT
CTTTTGTACATATTTATATTTCCCCTTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19069.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis