Browse Element(s) Details


Os.15240.1.A1_x_at

Description gb:CB629624
DB_XREF= gi:29624613
DB_XREF=OSIIEb06A05.r
CLONE=OSIIEb06A05
TID=Os.15240.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.15240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.30 (P0458E05.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7362011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15240.1.A1_x_at--100--7971Chr01:42979988..42980012 (25 bp)
GGATCTGCAGATAGGCCAAAGCTTT
LOC_Os01g73620
Os.15240.1.A1_x_at--803--5291Chr01:42980025..42980045 (21 bp)
GAAGTCCATTGAGCCAAGGTACTAC
LOC_Os01g73620
Os.15240.1.A1_x_at--428--5791Chr01:42980270..42980294 (25 bp)
GACGCAATTCGTCCGGCAATGCAAG
LOC_Os01g73620
Os.15240.1.A1_x_at--535--2351Chr01:42980328..42980352 (25 bp)
AAAGCTAGCACAGTTGTCGACATCT
LOC_Os01g73620
Os.15240.1.A1_x_at--1045--6771Chr01:42980371..42980395 (25 bp)
GTTACGGAGCCATCAAATTTCGCAG
LOC_Os01g73620
Os.15240.1.A1_x_at--1070--1791Chr01:42980397..42980421 (25 bp)
ACCCGGCCAGAGAGAATCCCATGAT
LOC_Os01g73620
Os.15240.1.A1_x_at--338--6091Chr01:42980427..42980451 (25 bp)
GAGTACGTCGAGCACAAGACCTACT
LOC_Os01g73620
Os.15240.1.A1_x_at--1064--9971Chr01:42980490..42980514 (25 bp)
TACCTTAGATGCTCCATTGGCAAAT
LOC_Os01g73620
Os.15240.1.A1_x_at--414--2971Chr01:42980532..42980556 (25 bp)
AATGGACATCTTGGACGTGCCTGAA
LOC_Os01g73620
Os.15240.1.A1_x_at--665--2811Chr01:42980606..42980630 (25 bp)
AAGATTTTGACTTCTCCGGAGGCCT
LOC_Os01g73620
Os.15240.1.A1_x_at--1149--6211Chr01:42980624..42980648 (25 bp)
GAGGCCTAGAAATCCCAGATGACGA
LOC_Os01g73620
Target Sequence 
GGATCTGCAGATAGGCCAAAGCTTTTAAAGCTTGACAGAAGTCCATTGAGCCAAGGTACTACAAAATGGAAAAAGAGTGA
CCGAGAAAGGGATCAAAACAGAGACGCGTCTTTGAAGAATTCTAATTCGAAATCAGGACGCAATTCGTCCGGCAATGCAA
GGAGTGAGCGTAAAACTAAGATAAAACCGAAGCAAAAGCTAGCACAGTTGTCGACATCTGGAAATGTTCTTGGAAGAGTT
ACGGAGCCATCAAATTTCGCAGCACCCGGCCAGAGAGAATCCCATGATTGGACGAGTACGTCGAGCACAAGACCTACTCA
ACCAGTCAGAAACAGCGCAGCTACTGTTGCCCAGGNTACCTTAGATGCTCCATTGGCAAATTTGCCTGCAATAGATCCAA
TGGACATCTTGGACGTGCCTGAAGGTAACGACATCAGTTCGTGGTTTACTGATGGTCTTGATGATTCCTTACAAGATTTT
GACTTCTCCGGAGGCCTAGAAATCCCAGATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15240.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis