Browse Element(s) Details


Os.13960.2.S1_x_at

Description gb:NM_189406.1
DB_XREF= gi:34905895
GEN=P0458E05.24
TID=Os.13960.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.13960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.24 (P0458E05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0458E05.24 (P0458E05.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7356011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13960.2.S1_x_at--455--5951Chr01:42946197..42946221 (25 bp)
GAGAATCTACCAATCAATGATGCTG
LOC_Os01g73560
Os.13960.2.S1_x_at--113--4751Chr01:42946176..42946200 (25 bp)
GCTGATACGCCTGATGATGGTCCTA
LOC_Os01g73560
Os.13960.2.S1_x_at--1048--6231Chr01:42946161..42946185 (25 bp)
GATGGTCCTACTGACATTTATACAA
LOC_Os01g73560
Os.13960.2.S1_x_at--877--131Chr01:42946101..42946125 (25 bp)
ATTAAGAGCCCTGAAGAACCTGCAG
LOC_Os01g73560
Os.13960.2.S1_x_at--1162--8971Chr01:42946081..42946105 (25 bp)
TGCAGGACAAAGTACTCGCCCGGAT
LOC_Os01g73560
Os.13960.2.S1_x_at--1092--1171Chr01:42946071..42946095 (25 bp)
AGTACTCGCCCGGATGTCACCATTG
LOC_Os01g73560
Os.13960.2.S1_x_at--1087--4171Chr01:42946042..42946066 (25 bp)
CCCAGCCAAATCTGAACTGCTTGAT
LOC_Os01g73560
Os.13960.2.S1_x_at--404--2351Chr01:42945996..42946020 (25 bp)
AAAGCGGCTGTAGAACATGTCAAGA
LOC_Os01g73560
Os.13960.2.S1_x_at--269--6191Chr01:42945958..42945982 (25 bp)
GAGGAAGGATGACAACTCTTCTGTT
LOC_Os01g73560
Os.13960.2.S1_x_at--204--2611Chr01:42945867..42945891 (25 bp)
AACGCCGACGGAATTGATGACACAG
LOC_Os01g73560
Os.13960.2.S1_x_at--686--7731Chr01:42945823..42945847 (25 bp)
GGTGTTCTCCGGTGAAGGCAACAAT
LOC_Os01g73560
Target Sequence 
GAGAATCTACCAATCAATGATGCTGATACGCCTGATGATGGTCCTACTGACATTTATACAAAAAAGAAAGGCAAGGGGAA
ACACTCAAAGCAACAAATTAAGAGCCCTGAAGAACCTGCAGGACAAAGTACTCGCCCGGATGTCACCATTGCTGCCCCAG
CCAAATCTGAACTGCTTGATGGCAAGGAAATGAAGAAGGAAAAAGCGGCTGTAGAACATGTCAAGAACAAGAAATCAAAG
AGGAAGGATGACAACTCTTCTGTTGATCATACTGATAAAAAGGTTAGTAAGGGAGCCAAGAGGACAAAATCTGCCAAGAA
GGAAGAGAAGAACGCCGACGGAATTGATGACACAGAAATGCCATTTGCAGACTTGGTGTTCTCCGGTGAAGGCAACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13960.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis