Browse Element(s) Details


Os.12693.4.S1_at

Description gb:AK120690.1
DB_XREF= gi:37990313
TID=Os.12693.4
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12693 (NCBI UniGene Cluster)
UG_TITLE=SS622 mRNA for ascorbate peroxidase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169H18, full insert sequence.
FL= gb:AK120690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7362011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12693.4.S1_at--706--10111Chr01:42980724..42980748 (25 bp)
TATGTTAGCACTGGCATTGCTTGGT
LOC_Os01g73620
Os.12693.4.S1_at--159--1511Chr01:42980730..42980754 (25 bp)
AGCACTGGCATTGCTTGGTTACCGT
LOC_Os01g73620
Os.12693.4.S1_at--258--8291Chr01:42980736..42980760 (25 bp)
GGCATTGCTTGGTTACCGTGGTAAC
LOC_Os01g73620
Os.12693.4.S1_at--761--1231Chr01:42980804..42980828 (25 bp)
AGTTGCAACTAGGAATTGATTCATT
LOC_Os01g73620
Os.12693.4.S1_at--272--7051Chr01:42980839..42980863 (25 bp)
GTAAAACTTGTAGTCGCCTTGTCGC
LOC_Os01g73620
Os.12693.4.S1_at--147--2431Chr01:42980841..42980865 (25 bp)
AAAACTTGTAGTCGCCTTGTCGCAT
LOC_Os01g73620
Os.12693.4.S1_at--1026--10791Chr01:42980846..42980870 (25 bp)
TTGTAGTCGCCTTGTCGCATATCTG
LOC_Os01g73620
Os.12693.4.S1_at--1158--10051Chr01:42980849..42980873 (25 bp)
TAGTCGCCTTGTCGCATATCTGCGA
LOC_Os01g73620
Os.12693.4.S1_at--83--9351Chr01:42980860..42980884 (25 bp)
TCGCATATCTGCGACCAGATTATTG
LOC_Os01g73620
Os.12693.4.S1_at--1081--4331Chr01:42980874..42980898 (25 bp)
CCAGATTATTGGTCGTATGATGTTT
LOC_Os01g73620
Os.12693.4.S1_at--30--10411Chr01:42980879..42980903 (25 bp)
TTATTGGTCGTATGATGTTTTATCT
LOC_Os01g73620
Target Sequence 
TATGTTAGCACTGGCATTGCTTGGTTACCGTGGTAACGGTGNCTGATTAGTCTCTTGTGCCCCNAAGGGCAGAGCTTGCA
AGTTGCAACTAGGAATTGATTCATTTATATATAGCGTAAAACTTGTAGTCGCCTTGTCGCATATCTGCGACCAGATTATT
GGTCGTATGATGTTTTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12693.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis